Evidence map›Paper›PMID 36163368›Full record

ArticleNature communications2022

Genetic analysis of seed traits in Sorghum bicolor that affect the human gut microbiome.

Qinnan Yang, Mallory Van Haute, Nate Korth, Scott E Sattler, John Toy, Devin J Rose, James C Schnable, Andrew K Benson

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Genetic dissection of sorghum [Frontiers in plant science · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Genome to gut: crop engineering for human microbiomes.Nature reviews. Microbiology · 2023
    Article
  11. Article
  12. Towards gut-friendly grains.Nature reviews. Genetics · 2022
    Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Qinnan YangDepartment of Food Science and Technology, University of Nebraska, Lincoln, NE, USA.ORCID 0000-0001-6444-6931
Mallory Van HauteDepartment of Food Science and Technology, University of Nebraska, Lincoln, NE, USA.
Nate KorthNebraska Food for Health Center, University of Nebraska, Lincoln, NE, USA.
Scott E SattlerWheat, Sorghum and Forage Research Unit, USDA-ARS, Lincoln, NE, USA.
John ToyWheat, Sorghum and Forage Research Unit, USDA-ARS, Lincoln, NE, USA.
Devin J RoseDepartment of Food Science and Technology, University of Nebraska, Lincoln, NE, USA.ORCID 0000-0002-1333-6318
James C SchnableNebraska Food for Health Center, University of Nebraska, Lincoln, NE, USA.ORCID 0000-0001-6739-5527
Andrew K BensonDepartment of Food Science and Technology, University of Nebraska, Lincoln, NE, USA. abenson1@unl.edu.ORCID 0000-0001-6330-0252
University of Nebraska–Lincoln · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prebiotic fibers, polyphenols and other molecular components of food crops significantly affect the composition and function of the human gut microbiome and human health. The abundance of these, frequently uncharacterized, microbiome-active components vary within individual crop species. Here, we employ high throughput in vitro fermentations of pre-digested grain using a human microbiome to identify segregating genetic loci in a food crop, sorghum, that alter the composition and function of human gut microbes. Evaluating grain produced by 294 sorghum recombinant inbreds identifies 10 loci in the sorghum genome associated with variation in the abundance of microbial taxa and/or microbial metabolites. Two loci co-localize with sorghum genes regulating the biosynthesis of condensed tannins. We validate that condensed tannins stimulate the growth of microbes associated with these two loci. Our work illustrates the potential for genetic analysis to systematically discover and characterize molecular components of food crops that influence the human gut microbiome.

Indexed as

Gastrointestinal MicrobiomeProanthocyanidinsSorghumCrops, AgriculturalEdible GrainHumansPolyphenolsSeedsPolyphenolsProanthocyanidins

Identifiers

PMID36163368
PMCPMC9513080
OpenAlexW4297238469

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.