Evidence map›Paper›PMID 36163011›Full record

ArticleBMC microbiology2022

Environmental and maternal factors shaping tonsillar microbiota development in piglets.

Simen Fredriksen, Xiaonan Guan, Jos Boekhorst, Francesc Molist, Peter van Baarlen, Jerry M Wells

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Microbial genomics · 2024
    Article
  7. Article
  8. Article
  9. The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. Article
  12. Role of Metabolic Adaptation ofPathogens (Basel, Switzerland) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Simen FredriksenHost-Microbe Interactomics Group, Animal Sciences Department, Wageningen University, Wageningen, The Netherlands. simen.fredriksen@wur.nl.
Xiaonan GuanHost-Microbe Interactomics Group, Animal Sciences Department, Wageningen University, Wageningen, The Netherlands.
Jos BoekhorstHost-Microbe Interactomics Group, Animal Sciences Department, Wageningen University, Wageningen, The Netherlands.
Francesc MolistSchothorst Feed Research B.V, Lelystad, The Netherlands.
Peter van BaarlenHost-Microbe Interactomics Group, Animal Sciences Department, Wageningen University, Wageningen, The Netherlands.
Jerry M WellsHost-Microbe Interactomics Group, Animal Sciences Department, Wageningen University, Wageningen, The Netherlands. jerry.wells@wur.nl.
Wageningen University & Research · NLSchothorst Feed Research · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe palatine tonsils are part of the mucosal immune system and stimulate immune responses through M cell uptake sampling of antigens and bacteria in the tonsillar crypts. Little is known about the development of the tonsillar microbiota and the factors determining the establishment and proliferation of disease-associated bacteria such as Streptococcus suis. In this study, we assessed tonsillar microbiota development in piglets during the first 5 weeks of life and identified the relative importance of maternal and environmental farm parameters influencing the tonsillar microbiota at different ages. Additionally, we studied the effect sow vaccination with a bacterin against S. suis on microbiota development and S. suis colonisation in their offspring.

resultsAmplicon sequencing of the 16S rRNA gene V3-V4 region revealed that a diverse tonsillar microbiota is established shortly after birth, which then gradually changes during the first 5 weeks of life without a large impact of weaning on composition or diversity. We found a strong litter effect, with siblings sharing a more similar microbiota compared to non-sibling piglets. Co-housing in rooms, within which litters were housed in separate pens, also had a large impact on microbiota composition. Sow parity and prepartum S. suis bacterin vaccination of sows had weaker but significant associations with microbiota composition, impacting on the abundance of Streptococcus species before and after weaning. Sex and birthweight had limited impact on the tonsillar microbiota, and none of the measured factors had consistent associations with microbiota diversity.

conclusionsThe piglet tonsillar microbiota is established shortly after birth. While microbiota development is associated with both environmental and maternal parameters, weaning has limited impact on microbiota composition. Intramuscular vaccination of sows pre-partum had a significant effect on the tonsillar microbiota composition of their piglets. These findings provide new insights into the mechanisms shaping the tonsillar microbiota.

Indexed as

MicrobiotaPalatine TonsilAnimalsAnimals, NewbornBacteriaBacterial VaccinesFemaleLactationPregnancyRNA, Ribosomal, 16SSwineWeaningBacterial VaccinesRNA, Ribosomal, 16Searly lifelongitudinalmicrobiotapigletsow

Identifiers

PMID36163011
PMCPMC9513891
OpenAlexW4297220481

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.