Evidence map›Paper›PMID 36162583›Full record

ArticleThe Science of the total environment2023

COPMAN: A novel high-throughput and highly sensitive method to detect viral nucleic acids including SARS-CoV-2 RNA in wastewater.

Yuka Adachi Katayama, Shin Hayase, Yoshinori Ando, Tomohiro Kuroita, Kazuya Okada, Ryo Iwamoto, Toru Yanagimoto, Masaaki Kitajima, Yusaku Masago

Open access · hybridAbstract read
In one paragraph

Article in The Science of the total environment, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Wastewater-based reproduction numbers and projections of COVID-19 cases in three areas in Japan, November 2021 to December 2022.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yuka Adachi KatayamaShionogi & Co., Ltd., Pharmaceutical Research Center, 1-1, Futaba-cho 3-chome, Toyonaka, Osaka 561-0825, Japan.
Shin HayaseShionogi & Co., Ltd., Pharmaceutical Research Center, 1-1, Futaba-cho 3-chome, Toyonaka, Osaka 561-0825, Japan.
Yoshinori AndoShionogi & Co., Ltd., Pharmaceutical Research Center, 1-1, Futaba-cho 3-chome, Toyonaka, Osaka 561-0825, Japan.
Tomohiro KuroitaShionogi & Co., Ltd., Pharmaceutical Research Center, 1-1, Futaba-cho 3-chome, Toyonaka, Osaka 561-0825, Japan; AdvanSentinel Inc., 3-1-8 Doshomachi, Chuo-ku, Osaka 541-0045, Japan.
Kazuya OkadaShionogi & Co., Ltd., Head Office, 3-1-8 Doshomachi, Chuo-ku, Osaka 541-0045, Japan.
Ryo IwamotoShionogi & Co., Ltd., Head Office, 3-1-8 Doshomachi, Chuo-ku, Osaka 541-0045, Japan; AdvanSentinel Inc., 3-1-8 Doshomachi, Chuo-ku, Osaka 541-0045, Japan.
Toru YanagimotoShionogi & Co., Ltd., Pharmaceutical Research Center, 1-1, Futaba-cho 3-chome, Toyonaka, Osaka 561-0825, Japan.
Masaaki KitajimaDivision of Environmental Engineering, Faculty of Engineering, Hokkaido University, North 13 West 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan.
Yusaku MasagoShionogi & Co., Ltd., Pharmaceutical Research Center, 1-1, Futaba-cho 3-chome, Toyonaka, Osaka 561-0825, Japan. Electronic address: yusaku.masago@shionogi.co.jp.
Shionogi (Japan) · JPFutaba (Japan) · JPHokkaido University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During the coronavirus disease 2019 (COVID-19) pandemic, wastewater-based epidemiology (WBE) attracted attention as an objective and comprehensive indicator of community infection that does not require individual inspection. Although several severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) detection methods from wastewater have been developed, there are obstacles to their social implementation. In this study, we developed the COPMAN (Coagulation and Proteolysis method using Magnetic beads for detection of Nucleic acids in wastewater), an automatable method that can concentrate and detect multiple types of viruses from a limited volume (∼10 mL) of wastewater. The COPMAN consists of a high basicity polyaluminum chloride (PAC) coagulation process, magnetic bead-based RNA purification, and RT-preamplification, followed by qPCR. A series of enzymes exhibiting a high tolerance to PCR inhibitors derived from wastewater was identified and employed in the molecular detection steps in the COPMAN. We compared the detectability of viral RNA from 10-mL samples of virus-spiked (heat-inactivated SARS-CoV-2 and intact RSV) or unspiked wastewater by the COPMAN and other methods (PEG-qPCR, UF-qPCR, and EPISENS-S). The COPMAN was the most efficient for detecting spiked viruses from wastewater, detecting the highest level of pepper mild mottle virus (PMMoV), a typical intrinsic virus in human stool, from wastewater samples. The COPMAN also successfully detected indigenous SARS-CoV-2 RNA from 12 samples of wastewater at concentrations of 2.2 × 10

Indexed as

COVID-19Nucleic AcidsVirusesHumansRNA, ViralSARS-CoV-2WastewaterNucleic AcidsRNA, ViralWastewaterAutomationCOVID-19Environmental surveillancePCRSewageWastewater-based epidemiology

Identifiers

PMID36162583
PMCPMC9502438
OpenAlexW4296818611

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.