Evidence map›Paper›PMID 36161889›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

A culture-free biphasic approach for sensitive and rapid detection of pathogens in dried whole-blood matrix.

Anurup Ganguli, Jongwon Lim, Ariana Mostafa, Carlos Saavedra, Archith Rayabharam, Narayana R Aluru, Matthew Wester, Karen C White, James Kumar, Reubin McGuffin and 3 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Nucleic Acid Amplification Tests forPathogens (Basel, Switzerland) · 2026
    Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Amplification-free, OR-gated CRISPR-Cascade reaction for pathogen detection in blood samples.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Rapid and sensitive identification ofFrontiers in cellular and infection microbiology · 2025
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Anurup GanguliDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.ORCID 0000-0002-6424-0084
Jongwon LimDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.
Ariana MostafaDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.
Carlos SaavedraNick Holonyak Jr. Micro and Nanotechnology Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.
Archith RayabharamDepartment of Mechanical Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.ORCID 0000-0003-0911-2319
Narayana R AluruDepartment of Mechanical Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.
Matthew WesterDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.
Karen C WhiteCritical Care, Carle Foundation Hospital, Urbana, IL-61801, USA.
James KumarHospital Medicine, Carle Foundation Hospital, Urbana, IL-61801, USA.ORCID 0000-0001-6616-0312
Reubin McGuffinSpecimen Procurement Service Center in the Research Department, Carle Foundation Hospital, Urbana, IL-61801, USA.
Ann FrederickMicrobiology, Carle Foundation Hospital, Urbana,IL-61801, USA.
Enrique ValeraDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.ORCID 0000-0003-1359-6619
Rashid BashirDepartment of Bioengineering, University of Illinois at Urbana-Champaign, Urbana, IL-61801, USA.
University of Illinois Urbana-Champaign · USCarle Foundation Hospital · US

Funding

High accuracy optical growth assay of 3D cellular systemsR01GM129709 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BASHIR, RASHID · 2019 to 2022
$2.1M
Multiplexed Pathogen Detection from Whole Blood for Rapid Detection of SepsisR21AI146865 · NIAID · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI BASHIR, RASHID · 2019 to 2020
$424k
Prenatal Care for African American Women: Effect of Client-Provider InteractionF31NR010320 · NINR · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DAHLEM, CHIN HWA YI · 2007 to 2009
$88k
NIAID NIH HHS R21 AI146865NIGMS NIH HHS R01 GM129709NINR NIH HHS F31 NR010320
6 · The paper itself

Abstract

Blood stream infections (BSIs) cause high mortality, and their rapid detection remains a significant diagnostic challenge. Timely and informed administration of antibiotics can significantly improve patient outcomes. However, blood culture, which takes up to 5 d for a negative result, followed by PCR remains the gold standard in diagnosing BSI. Here, we introduce a new approach to blood-based diagnostics where large blood volumes can be rapidly dried, resulting in inactivation of the inhibitory components in blood. Further thermal treatments then generate a physical microscale and nanoscale fluidic network inside the dried matrix to allow access to target nucleic acid. The amplification enzymes and primers initiate the reaction within the dried blood matrix through these networks, precluding any need for conventional nucleic acid purification. High heme background is confined to the solid phase, while amplicons are enriched in the clear supernatant (liquid phase), giving fluorescence change comparable to purified DNA reactions. We demonstrate single-molecule sensitivity using a loop-mediated isothermal amplification reaction in our platform and detect a broad spectrum of pathogens, including gram-positive methicillin-resistant and methicillin-susceptible

Indexed as

DNA, BacterialDNA, FungalDried Blood Spot TestingPolymerase Chain ReactionSepsisAnti-Bacterial AgentsCandida albicansEscherichia coliHemeHumansLimit of DetectionMethicillinSensitivity and SpecificityStaphylococcus aureusStem CellsAnti-Bacterial AgentsDNA, BacterialDNA, FungalHemeMethicillinbiphasicblood stream infection (BSI)isothermal amplificationporous dried blood matrixsepsis diagnosis

Identifiers

PMID36161889
PMCPMC9546527
OpenAlexW4297093791

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.