Evidence map›Paper›PMID 36161484›Full record

ArticleNucleic acids research2022

Human NOP2/NSUN1 regulates ribosome biogenesis through non-catalytic complex formation with box C/D snoRNPs.

Han Liao, Anushri Gaur, Hunter McConie, Amirtha Shekar, Karen Wang, Jeffrey T Chang, Ghislain Breton, Catherine Denicourt

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 1 pooled it
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 1 synthesis or guideline pooled it, 101 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. RNA modifications in cancer and their detection: a review.Japanese journal of clinical oncology · 2026
    Review
  7. Review
  8. Elevating RNA mNational science review · 2026
    Article
  9. mBiology direct · 2026
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Aberrant NSUN1 activity connects mLife science alliance · 2026
    Article
  16. Review
  17. Review
  18. Review
  19. Advances in RNA modification in myocardial fibrosis (Review).International journal of molecular medicine · 2025
    Review
  20. Review

9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Han LiaoDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center, Houston, TX 77030, USA.
Anushri GaurDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center, Houston, TX 77030, USA.
Hunter McConieDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center, Houston, TX 77030, USA.
Amirtha ShekarDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center, Houston, TX 77030, USA.
Karen WangWiess College, Rice University, Houston, TX 77251, USA.
Jeffrey T ChangDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center, Houston, TX 77030, USA.ORCID 0000-0002-4578-5636
Ghislain BretonDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center, Houston, TX 77030, USA.
Catherine DenicourtDepartment of Integrative Biology and Pharmacology, McGovern Medical School, The University of Texas Health Science Center, Houston, TX 77030, USA.ORCID 0000-0001-8721-0163
The University of Texas Health Science Center at Houston · USRice University · US

Funding

Mechanisms of aberrant ribosomal RNA (rRNA) methylation and altered mRNA translation in cancersR01CA230746 · NCI · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DENICOURT, CATHERINE · 2019 to 2023
$1.8M
NCI NIH HHS R01 CA230746
6 · The paper itself

Abstract

5-Methylcytosine (m5C) is a base modification broadly found on various RNAs in the human transcriptome. In eukaryotes, m5C is catalyzed by enzymes of the NSUN family composed of seven human members (NSUN1-7). NOP2/NSUN1 has been primarily characterized in budding yeast as an essential ribosome biogenesis factor required for the deposition of m5C on the 25S ribosomal RNA (rRNA). Although human NOP2/NSUN1 has been known to be an oncogene overexpressed in several types of cancer, its functions and substrates remain poorly characterized. Here, we used a miCLIP-seq approach to identify human NOP2/NSUN1 RNA substrates. Our analysis revealed that NOP2/NSUN1 catalyzes the deposition of m5C at position 4447 on the 28S rRNA. We also find that NOP2/NSUN1 binds to the 5'ETS region of the pre-rRNA transcript and regulates pre-rRNA processing through non-catalytic complex formation with box C/D snoRNAs. We provide evidence that NOP2/NSUN1 facilitates the recruitment of U3 and U8 snoRNAs to pre-90S ribosomal particles and their stable assembly into snoRNP complexes. Remarkably, expression of both WT and catalytically inactive NOP2/NSUN1 in knockdown background rescues the rRNA processing defects and the stable assembly of box C/D snoRNP complexes, suggesting that NOP2/NSUN1-mediated deposition of m5C on rRNA is not required for ribosome synthesis.

Indexed as

Ribonucleoproteins, Small Nucleolar5-MethylcytosineHumansNuclear ProteinsRibosomesRNA PrecursorsRNA, RibosomalRNA, Ribosomal, 28SRNA, Small NucleolarSaccharomyces cerevisiae ProteinstRNA Methyltransferases5-MethylcytosineNOP2 protein, humanNuclear ProteinsRibonucleoproteins, Small NucleolarRNA PrecursorsRNA, RibosomalRNA, Ribosomal, 28SRNA, Small NucleolarSaccharomyces cerevisiae ProteinstRNA Methyltransferases

Identifiers

PMID36161484
PMCPMC9561284
OpenAlexW4297264236

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.