Evidence map›Paper›PMID 36160735›Full record

ArticleWorld journal of gastrointestinal oncology2022

Profiling of gene fusion involving targetable genes in Chinese gastric cancer.

Zhen-Hua Liu, Bo-Wen Zhu, Min Shi, Yu-Rong Qu, Xun-Jun He, Hong-Ling Yuan, Jie Ma, Wei Li, Dan-Dan Zhao, Zheng-Chuang Liu and 4 more

Abstract read
In one paragraph

Article in World journal of gastrointestinal oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Trial
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Zhen-Hua LiuDepartment of Medical Oncology, Fujian Medical University, Fuzhou 350001, Fujian Province, China.
Bo-Wen ZhuMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Min ShiMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Yu-Rong QuMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Xun-Jun HeDepartment of Genetics and Genomic Medicine, Zhejiang Provincial People's Hospital, Hangzhou 310000, Zhejiang Province, China.
Hong-Ling YuanMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Jie MaDepartment of Pathology, Zhejiang Provincial People's Hospital, Hangzhou 310000, Zhejiang Province, China.
Wei LiMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Dan-Dan ZhaoMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Zheng-Chuang LiuKey Laboratory of Gastroenterology of Zhejiang Province, Zhejiang Provincial People's Hospital, Hangzhou 310000, Zhejiang Province, China.
Bao-Ming WangMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Chun-Yang WangMedical Center, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China.
Hou-Quan TaoKey Laboratory of Gastroenterology of Zhejiang Province, Zhejiang Provincial People's Hospital, Hangzhou 310000, Zhejiang Province, China.
Tong-Hui MaDepartment of Translational Medicine, Genetron Health (Beijing) Technology, Co. Ltd., Beijing 102200, China. tonghuima0818@sina.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundApproximately half of all new cases of gastric cancer (GC) and related deaths occur in China. More than 80% of patients with GC are diagnosed at an advanced stage, which results in poor prognosis. Although

aimTo identify the profile of fusions involving targetable genes in Chinese patients with GC using clinical specimens and determine the distribution of patients with gene fusion variants among the molecular subtypes of GC.

methodsWe retrospectively analyzed gene fusion events in tumor tissue samples from 954 Chinese patients with GC. Clinicopathological characteristics were obtained from their medical records. Genetic alterations, such as single nucleotide variants, indels, amplifications, and gene fusions, were identified using a targeted sequencing panel containing 825 genes. Fusions were validated by fluorescence in situ hybridization (FISH) using break-apart probes. The microsatellite instability (MSI) status was evaluated using MSIsensor from the targeted sequencing panel data. Tumor mutational burden (TMB) was calculated using the total number of nonsynonymous mutations divided by the total genomic targeted region. Chi-square analysis was used to determine the enrichment of gene fusions associated with the molecular subtypes of GC.

resultsWe found that 1.68% (16/954) of patients harbored 20 fusion events involving targetable genes.

conclusionWe characterized the landscape of fusions involving targetable genes in a Chinese GC cohort and found that 1.68% of patients with GC harbor potential targetable gene fusions, which were enriched in patients with

Indexed as

Chinese populationERBB2 amplificationGastric cancerGene fusionTargetable genes

Identifiers

PMID36160735
PMCPMC9412921

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