Evidence map›Paper›PMID 36160147›Full record

ArticleFrontiers in medicine2022

Computational tumor stroma reaction evaluation led to novel prognosis-associated fibrosis and molecular signature discoveries in high-grade serous ovarian carcinoma.

Jun Jiang, Burak Tekin, Lin Yuan, Sebastian Armasu, Stacey J Winham, Ellen L Goode, Hongfang Liu, Yajue Huang, Ruifeng Guo, Chen Wang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Jun JiangDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, United States.
Burak TekinDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, United States.
Lin YuanPathology Center, Shanghai General Hospital, Shanghai, China.
Sebastian ArmasuDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, United States.
Stacey J WinhamDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, United States.
Ellen L GoodeDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, United States.
Hongfang LiuDepartment of Artificial Intelligence and Informatics, Mayo Clinic, Rochester, MN, United States.
Yajue HuangDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, United States.
Ruifeng GuoDepartment of Laboratory Medicine and Pathology, Mayo Clinic, Rochester, MN, United States.
Chen WangDepartment of Quantitative Health Sciences, Mayo Clinic, Rochester, MN, United States.
Mayo Clinic in Florida · USMayo Clinic in Arizona · USShanghai First People's Hospital · CN

Funding

Relating Molecular Subgroups of Endometriosis-Associated Ovarian Cancers to Survival and RiskR01CA248288 · NCI · MAYO CLINIC ROCHESTER · PI Stacey J Winham · 2021 to 2026
$4.8M
NCI NIH HHS R01 CA248288
6 · The paper itself

Abstract

Background: As one of the key criteria to differentiate benign vs. malignant tumors in ovarian and other solid cancers, tumor-stroma reaction (TSR) is long observed by pathologists and has been found correlated with patient prognosis. However, paucity of study aims to overcome subjective bias or automate TSR evaluation for enabling association analysis to a large cohort. Materials and methods: Serving as positive and negative sets of TSR studies, H&E slides of primary tumors of high-grade serous ovarian carcinoma (HGSOC) ( Results: The trained models accurately identified the tumor stroma tissue regions and predicted TSR scores. Within tumor stroma interface region, TSR fibrosis scores were strongly associated with patient prognosis. Cancer signaling aberrations associated 14 KEGG pathways were also found positively correlated with TSR-fibrosis score. Conclusion: With the aid of DL, TSR evaluation could be generalized to large cohort to enable prognostic association analysis and facilitate discovering novel gene and pathways associated with disease progress.

Indexed as

digital pathologyhigh-grade serous ovarian carcinomamolecular signatureprognostic fibrosistumor-stroma reaction

Identifiers

PMID36160147
PMCPMC9490262
OpenAlexW4294935563

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.