Evidence map›Paper›PMID 36159887›Full record

ArticlePHAGE (New Rochelle, N.Y.)2021

INfrastructure for a PHAge REference Database: Identification of Large-Scale Biases in the Current Collection of Cultured Phage Genomes.

Ryan Cook, Nathan Brown, Tamsin Redgwell, Branko Rihtman, Megan Barnes, Martha Clokie, Dov J Stekel, Jon Hobman, Michael A Jones, Andrew Millard

Abstract read
In one paragraph

Article in PHAGE (New Rochelle, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 246 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
246citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

246 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Revisiting the life cycle of temperate phages.Nature reviews. Microbiology · 2026
    Review
  4. Genome sequences of sixMicrobiology resource announcements · 2026
    Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Plasmid-encoded host reprogramming promotes plasmid dissemination.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Genome sequences of 19Microbiology resource announcements · 2026
    Article
  15. Article
  16. Article
  17. Characterization ofPHAGE (New Rochelle, N.Y.) · 2026
    Article
  18. Article
  19. Article
  20. Article

186 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ryan CookSchool of Veterinary Medicine and Science, University of Nottingham, Loughborough, United Kingdom.
Nathan BrownDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Tamsin RedgwellCOPSAC, Copenhagen Prospective Studies on Asthma in Childhood, Herlev and Gentofte Hospital, University of Copenhagen, Copenhagen, Denmark.
Branko RihtmanSchool of Life Sciences, University of Warwick, Coventry, United Kingdom.
Megan BarnesDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Martha ClokieDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.
Dov J StekelSchool of Biosciences, University of Nottingham, Loughborough, United Kingdom.
Jon HobmanSchool of Biosciences, University of Nottingham, Loughborough, United Kingdom.
Michael A JonesSchool of Veterinary Medicine and Science, University of Nottingham, Loughborough, United Kingdom.
Andrew MillardDepartment of Genetics and Genome Biology, University of Leicester, Leicester, United Kingdom.ORCID https://orcid.org/0000-0002-3895-2854

Funding

Medical Research Council MR/L015080/1Medical Research Council MR/T030062/1MRF_ MRF-145-0004-TPG-AVISO
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

antibiotic resistance genesjumbo phagesphage genomesvirulence genes

Identifiers

PMID36159887
PMCPMC9041510

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.