Evidence map›Paper›PMID 36157596›Full record

ArticlePNAS nexus2022

Regulation of multiple dimeric states of E-cadherin by adhesion activating antibodies revealed through Cryo-EM and X-ray crystallography.

Allison Maker, Madison Bolejack, Leslayann Schecterson, Brad Hammerson, Jan Abendroth, Thomas E Edwards, Bart Staker, Peter J Myler, Barry M Gumbiner

Open access · goldAbstract read
In one paragraph

Article in PNAS nexus, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Engineering the Interactions of Classical Cadherin Cell-Cell Adhesion Proteins.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Review
  10. Autocorrelation analysis for cryo-EM with sparsity constraints: Improved sample complexity and projection-based algorithms.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Molecular mechanism for strengthening E-cadherin adhesion using a monoclonal antibody.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Allison MakerDepartment of Biochemistry, University of Washington, USA.
Madison BolejackUCB Pharma, Bainbridge, WA, USA.
Leslayann SchectersonCenter for Developmental Biology and Regenerative Medicine, Seattle Children's Research Institute, USA.
Brad HammersonSeattle Structural Genomics Center for Infectious Disease, USA.
Jan AbendrothUCB Pharma, Bainbridge, WA, USA.
Thomas E EdwardsUCB Pharma, Bainbridge, WA, USA.ORCID https://orcid.org/0000-0002-0474-8003
Bart StakerSeattle Structural Genomics Center for Infectious Disease, USA.
Peter J MylerSeattle Structural Genomics Center for Infectious Disease, USA.ORCID https://orcid.org/0000-0002-0056-0513
Barry M GumbinerDepartment of Biochemistry, University of Washington, USA.
Infectious Disease Research Institute · USJoint Center for Structural Genomics · USUniversity of Washington · US

Funding

Regulation of cell junctions and cell contact dependent signaling in tissue development and physiologyR35GM122467 · NIGMS · SEATTLE CHILDREN'S HOSPITAL · PI GUMBINER, BARRY M. · 2017 to 2021
$3.9M
NIAID NIH HHS HHSN272201700059CNIGMS NIH HHS R35 GM122467
6 · The paper itself

Abstract

E-cadherin adhesion is regulated at the cell surface, a process that can be replicated by activating antibodies. We use cryo-electron microscopy (EM) and X-ray crystallography to examine functional states of the cadherin adhesive dimer. This dimer is mediated by N-terminal beta strand-swapping involving Trp2, and forms via a different transient X-dimer intermediate. X-dimers are observed in cryo-EM along with monomers and strand-swap dimers, indicating that X-dimers form stable interactions. A novel EC4-mediated dimer was also observed. Activating Fab binding caused no gross structural changes in E-cadherin monomers, but can facilitate strand swapping. Moreover, activating Fab binding is incompatible with the formation of the X-dimer. Both cryo-EM and X-ray crystallography reveal a distinctive twisted strand-swap dimer conformation caused by an outward shift in the N-terminal beta strand that may represent a strengthened state. Thus, regulation of adhesion involves changes in cadherin dimer configurations.

Identifiers

PMID36157596
PMCPMC9491697
OpenAlexW4293848724

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.