Evidence map›Paper›PMID 36153345›Full record

ArticleNature communications2022

Human centromere repositioning activates transcription and opens chromatin fibre structure.

Catherine Naughton, Covadonga Huidobro, Claudia R Catacchio, Adam Buckle, Graeme R Grimes, Ryu-Suke Nozawa, Stefania Purgato, Mariano Rocchi, Nick Gilbert

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Revisiting the question: When is a centromere not a kinetochore?Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  7. The dynamic centromere.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Churros: a Docker-based pipeline for large-scale epigenomic analysis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2024
    Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Catherine NaughtonMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK.
Covadonga HuidobroMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK.ORCID 0000-0001-9823-3846
Claudia R CatacchioMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK.
Adam BuckleMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK.
Graeme R GrimesMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK.
Ryu-Suke NozawaMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK.
Stefania PurgatoMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK.
Mariano RocchiDepartment of Biology, University of Bari, Via Orabona 4, 70125, Bari, Italy.
Nick GilbertMRC Human Genetics Unit, The University of Edinburgh, Crewe Rd, Edinburgh, EH4 2XU, UK. Nick.Gilbert@ed.ac.uk.ORCID 0000-0003-0505-6081

Funding

Medical Research Council MC_UU_00007/13Medical Research Council MR/J00913X/1
6 · The paper itself

Abstract

Human centromeres appear as constrictions on mitotic chromosomes and form a platform for kinetochore assembly in mitosis. Biophysical experiments led to a suggestion that repetitive DNA at centromeric regions form a compact scaffold necessary for function, but this was revised when neocentromeres were discovered on non-repetitive DNA. To test whether centromeres have a special chromatin structure we have analysed the architecture of a neocentromere. Centromere repositioning is accompanied by RNA polymerase II recruitment and active transcription to form a decompacted, negatively supercoiled domain enriched in 'open' chromatin fibres. In contrast, centromerisation causes a spreading of repressive epigenetic marks to surrounding regions, delimited by H3K27me3 polycomb boundaries and divergent genes. This flanking domain is transcriptionally silent and partially remodelled to form 'compact' chromatin, similar to satellite-containing DNA sequences, and exhibits genomic instability. We suggest transcription disrupts chromatin to provide a foundation for kinetochore formation whilst compact pericentromeric heterochromatin generates mechanical rigidity.

Indexed as

HeterochromatinHistonesCentromereChromatinDNADNA, SatelliteHumansRNA Polymerase IIChromatinDNADNA, SatelliteHeterochromatinHistonesRNA Polymerase II

Identifiers

PMID36153345
PMCPMC9509383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.