Evidence map›Paper›PMID 36153309›Full record

ArticleNature communications2022

Tail proteins of phage SU10 reorganize into the nozzle for genome delivery.

Marta Šiborová, Tibor Füzik, Michaela Procházková, Jiří Nováček, Martin Benešík, Anders S Nilsson, Pavel Plevka

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

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  16. Integrative structural analysis ofResearch square · 2024
    Article
  17. Article
  18. Review
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  20. Using AlphaFold Predictions in Viral Research.Current issues in molecular biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Marta ŠiborováCentral European Institute of Technology, Kamenice 753/5, 625 00, Brno, Czech Republic.ORCID 0000-0002-6879-5247
Tibor FüzikCentral European Institute of Technology, Kamenice 753/5, 625 00, Brno, Czech Republic.ORCID 0000-0002-1190-0210
Michaela ProcházkováCentral European Institute of Technology, Kamenice 753/5, 625 00, Brno, Czech Republic.ORCID 0000-0002-4229-9202
Jiří NováčekCentral European Institute of Technology, Kamenice 753/5, 625 00, Brno, Czech Republic.
Martin BenešíkFaculty of Science, Masaryk University, Kamenice 753/5, 625 00, Brno, Czech Republic.
Anders S NilssonDepartment of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, 106 91, Stockholm, Sweden.ORCID 0000-0003-0115-4151
Pavel PlevkaCentral European Institute of Technology, Kamenice 753/5, 625 00, Brno, Czech Republic. pavel.plevka@ceitec.muni.cz.ORCID 0000-0003-4215-3315
Central European Institute of Technology · CZMasaryk University · CZStockholm University · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli phage SU10 belongs to the genus Kuravirus from the class Caudoviricetes of phages with short non-contractile tails. In contrast to other short-tailed phages, the tails of Kuraviruses elongate upon cell attachment. Here we show that the virion of SU10 has a prolate head, containing genome and ejection proteins, and a tail, which is formed of portal, adaptor, nozzle, and tail needle proteins and decorated with long and short fibers. The binding of the long tail fibers to the receptors in the outer bacterial membrane induces the straightening of nozzle proteins and rotation of short tail fibers. After the re-arrangement, the nozzle proteins and short tail fibers alternate to form a nozzle that extends the tail by 28 nm. Subsequently, the tail needle detaches from the nozzle proteins and five types of ejection proteins are released from the SU10 head. The nozzle with the putative extension formed by the ejection proteins enables the delivery of the SU10 genome into the bacterial cytoplasm. It is likely that this mechanism of genome delivery, involving the formation of the tail nozzle, is employed by all Kuraviruses.

Indexed as

BacteriophagesPhosmetPodoviridaeDNA, ViralGenome, ViralDNA, ViralPhosmet

Identifiers

PMID36153309
PMCPMC9509320
OpenAlexW4296932213

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.