Evidence map›Paper›PMID 36149889›Full record

ArticlePloS one2022

Molecular characterization of haemagglutinin genes of influenza B viruses circulating in Ghana during 2016 and 2017.

Alhassan Mohammed Yakubu, Nii Ayite Aryee, Evelyn Yayra Bonney, Erasmus Nikoi Kotey, Joseph Humphrey Kofi Bonney, Michael R Wiley, Catherine B Pratt, Grace Korkor Ababio, Shieley Nimo-Paintsil, Naiki Puplampu and 8 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 3 countries.

Alhassan Mohammed YakubuDepartment of Medical Biochemistry, School of Biomedical and Allied Health Sciences, University of Ghana, Accra, Ghana.ORCID 0000-0001-5218-062X
Nii Ayite AryeeDepartment of Medical Biochemistry, School of Biomedical and Allied Health Sciences, University of Ghana, Accra, Ghana.
Evelyn Yayra BonneyVirology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Erasmus Nikoi KoteyVirology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Joseph Humphrey Kofi BonneyVirology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
Michael R WileyCollege of Public Health, University of Nebraska Medical Center, Omaha, Nebraska, United States of America.
Catherine B PrattCollege of Public Health, University of Nebraska Medical Center, Omaha, Nebraska, United States of America.ORCID 0000-0001-6132-2570
Grace Korkor AbabioDepartment of Medical Biochemistry, School of Biomedical and Allied Health Sciences, University of Ghana, Accra, Ghana.
Shieley Nimo-PaintsilU.S. Naval Medical Research Unit-No. 3 (NAMRU-3) Ghana Detachment, Accra, Ghana.
Naiki PuplampuU.S. Naval Medical Research Unit-No. 3 (NAMRU-3) Ghana Detachment, Accra, Ghana.
Seth AttohPathology Division-Laboratory, 37 Military Hospital, Accra, Ghana.
Raymond D FatchuPathology Division-Laboratory, 37 Military Hospital, Accra, Ghana.
Edward Owusu NyarkoPublic Health Division, 37 Military Hospital, Accra, Ghana.
Anne FoxU.S. Naval Medical Research Unit-No. 3 (NAMRU-3) Ghana Detachment, Accra, Ghana.
Chaselynn M WattersU.S. Naval Medical Research Unit-No. 3 (NAMRU-3) Ghana Detachment, Accra, Ghana.
Terrel SandersU.S. Naval Medical Research Unit-No. 3 (NAMRU-3) Ghana Detachment, Accra, Ghana.
Andrew G LetiziaU.S. Naval Medical Research Center (NMRC) Infectious Diseases Directorate, Silver Spring, Maryland, United States of America.
William Kwabena AmpofoVirology Department, Noguchi Memorial Institute for Medical Research, University of Ghana, Accra, Ghana.
University of Ghana · GHUnited States Naval Medical Research Unit SOUTH · PE37 Military Hospital · GHUniversity of Nebraska Medical Center · USNaval Medical Research Command · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent reports of haemagglutinin antigen (HA) mismatch between vaccine composition strains and circulating strains, have led to renewed interest in influenza B viruses. Additionally, there are concerns about resistance to neuraminidase inhibitors in new influenza B isolates. To assess the potential impact in Ghana, we characterized the lineages of influenza B viruses that circulated in Ghana between 2016 and 2017 from different regions of the country: Southern, Northern and Central Ghana. Eight representative specimens from the three regions that were positive for influenza B virus by real-time RT-PCR were sequenced and compared to reference genomes from each lineage. A total of eleven amino acids substitutions were detected in the B/Victoria lineage and six in the B/Yamagata lineage. The strains of influenza B viruses were closely related to influenza B/Brisbane/60/2008 and influenza B/Phuket/3073/2013 for the Victoria and Yamagata lineages, respectively. Three main amino acid substitutions (P31S, I117V and R151K) were found in B/Victoria lineages circulating between 2016 and 2017, while one strain of B/Victoria possessed a unique glycosylation site at amino acid position 51 in the HA2 subunit. Two main substitutions (L172Q and M251V) were detected in the HA gene of the B/Yamagata lineage. The U.S. CDC recently reported a deletion sub-group in influenza B virus, but this was not identified among the Ghanaian specimens. Close monitoring of the patterns of influenza B evolution is necessary for the efficient selection of representative viruses for the design and formulation of effective influenza vaccines.

Indexed as

Hemagglutinin Glycoproteins, Influenza VirusInfluenza B virusInfluenza, HumanAmino AcidsGhanaHumansNeuraminidasePhylogenyAmino AcidsHemagglutinin Glycoproteins, Influenza VirusNeuraminidase

Identifiers

PMID36149889
PMCPMC9506629
OpenAlexW2904951290

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.