Evidence map›Paper›PMID 36149031›Full record

ArticleJournal of extracellular vesicles2022

Extracellular vesicle-bound DNA in urine is indicative of kidney allograft injury.

Ivana Sedej, Maja Štalekar, Magda Tušek Žnidarič, Katja Goričar, Nika Kojc, Polona Kogovšek, Vita Dolžan, Miha Arnol, Metka Lenassi

Open access · goldAbstract read
In one paragraph

Article in Journal of extracellular vesicles, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 28 citations in OpenAlex.

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  20. Effect of radiotherapy on the DNA cargo and cellular uptake mechanisms of extracellular vesicles.Strahlentherapie und Onkologie : Organ der Deutschen Rontgengesellschaft ... [et al] · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ivana SedejDepartment of Nephrology, Division of Internal Medicine, University Medical Center Ljubljana, Ljubljana, Slovenia.ORCID 0000-0001-7818-7619
Maja ŠtalekarDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.ORCID 0000-0003-3114-6494
Magda Tušek ŽnidaričDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.ORCID 0000-0002-4349-3752
Katja GoričarInstitute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.ORCID 0000-0001-5673-4458
Nika KojcInstitute of Pathology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.ORCID 0000-0003-1893-4349
Polona KogovšekDepartment of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.ORCID 0000-0002-4035-0115
Vita DolžanInstitute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.ORCID 0000-0001-6707-6649
Miha ArnolDepartment of Nephrology, Division of Internal Medicine, University Medical Center Ljubljana, Ljubljana, Slovenia.ORCID 0000-0002-2379-7820
Metka LenassiInstitute of Biochemistry and Molecular Genetics, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.ORCID 0000-0002-9488-6855
University of Ljubljana · SINational Institute of Biology · SI

Funding

Javna Agencija za Raziskovalno Dejavnost RS P1-0170Javna Agencija za Raziskovalno Dejavnost RS P3-0323Javna Agencija za Raziskovalno Dejavnost RS P4-0165Javna Agencija za Raziskovalno Dejavnost RS P4-0407
6 · The paper itself

Abstract

Extracellular vesicle-bound DNA (evDNA) is an understudied extracellular vesicle (EV) cargo, particularly in cancer-unrelated research. Although evDNA has been detected in urine, little is known about its characteristics, localization, and biomarker potential for kidney pathologies. To address this, we enriched EVs from urine of well-characterized kidney transplant recipients undergoing allograft biopsy, characterized their evDNA and its association to allograft injury. The SEC-based method enriched pure EVs from urine of kidney transplant recipients, regardless of the allograft injury. Urinary evDNA represented up to 29.2 ± 8% (mean ± SD) of cell-free DNA (cfDNA) and correlated with cfDNA in several characteristics but was less fragmented (P < 0.001). Importantly, using DNase treatment and immunogold labelling TEM, we demonstrated that evDNA was bound to the surface of urinary EVs. Normalised evDNA yield (P = 0.042) and evDNA copy number (P = 0.027) significantly differed between patients with normal histology, rejection injury and non-rejection injury, the later groups having significantly larger uEVs (mean diameter, P = 0.045) and more DNA bound per uEV. ddDNA is detectable in uEV samples of kidney allograft recipients, but its quantity is highly variable. In a proof-of-principle study, several evDNA characteristics correlated with clinical and histological parameters (P = 0.040), supporting that the potential of evDNA as a biomarker for kidney allograft injury should be further investigated.

Indexed as

Cell-Free Nucleic AcidsExtracellular VesiclesAllograftsBiomarkersDeoxyribonucleasesDNAHumansKidneyBiomarkersCell-Free Nucleic AcidsDeoxyribonucleasesDNAcell-free DNAdonor-derived DNAextracellular vesicleskidney allograft injurykidney allograft rejectionliquid biopsyurine

Identifiers

PMID36149031
PMCPMC9503341
OpenAlexW4296794346

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.