Evidence map›Paper›PMID 36148785›Full record

ArticlePlant biotechnology journal2023

Rewiring of the seed metabolome during Tartary buckwheat domestication.

Hui Zhao, Yuqi He, Kaixuan Zhang, Shijuan Li, Yong Chen, Ming He, Feng He, Bin Gao, Di Yang, Yu Fan and 9 more

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 59 citations in OpenAlex.

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  12. Application of GWAS and mGWAS in Livestock and Poultry Breeding.Animals : an open access journal from MDPI · 2024
    Review
  13. Genetic analysis of yield components in buckwheat using high-throughput sequencing analysis and wild resource populations.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 11 institutions in 6 countries.

Hui Zhao *Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID 0000-0002-0175-5494
Yuqi He *Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Kaixuan Zhang *Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Shijuan Li *Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Yong Chen *Wuhan Metware Biotechnology Co., Ltd., Wuhan, China.
Ming HeInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Feng HeInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Bin GaoInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Di YangInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Yu FanInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.
Xuemei ZhuCollege of Environmental Sciences, Sichuan Agricultural University, Chengdu, China.
Mingli YanCrop Research Institute, Hunan Academy of Agricultural Sciences, Changsha, China.
Nathalie Giglioli-Guivarc'hEA2106 Biomolécules et Biotechnologies Végétales, Université de Tours, Tours, France.
Christophe HanoLaboratoire de Biologie des Ligneux et des Grandes Cultures (LBLGC EA1207), INRA USC1328, Plant Lignans Team, Université d'Orléans, Orléans Cédex 2, France.
Alisdair R FernieDepartment of Molecular Physiology, Max-Planck-Institute of Molecular Plant Physiology, Potsdam-Golm, Germany.ORCID 0000-0001-9000-335X
Milen I GeorgievCenter of Plant Systems Biology and Biotechnology, Plovdiv, Bulgaria.ORCID 0000-0001-5248-6135
Dagmar JanovskáDepartment of Gene Bank, Crop Research Institute (CRI), Praha 6, Czech Republic.
Vladimir MegličAgricultural Institute of Slovenia, Ljubljana, Slovenia.
Meiliang ZhouInstitute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China.ORCID 0000-0001-5175-3684
Chinese Academy of Agricultural Sciences · CNAgricultural institute of Slovenia · SIBulgarian Academy of Sciences · BGCzech Agrifood Research Center · CZGansu Agricultural University · CNHunan Academy of Agricultural Sciences · CNMax Planck Society · DESichuan Agricultural University · CNUniversité de Tours · FRUniversité d'Orléans · FRWuhan Institute of Bioengineering · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Crop domestication usually leads to the narrowing genetic diversity. However, human selection mainly focuses on visible traits, such as yield and plant morphology, with most metabolic changes being invisible to the naked eye. Buckwheat accumulates abundant bioactive substances, making it a dual-purpose crop with excellent nutritional and medical value. Therefore, examining the wiring of these invisible metabolites during domestication is of major importance. The comprehensive profiling of 200 Tartary buckwheat accessions exhibits 540 metabolites modified as a consequence of human selection. Metabolic genome-wide association study illustrates 384 mGWAS signals for 336 metabolites are under selection. Further analysis showed that an R2R3-MYB transcription factor FtMYB43 positively regulates the synthesis of procyanidin. Glycoside hydrolase gene FtSAGH1 is characterized as responsible for the release of active salicylic acid, the precursor of aspirin and indispensably in plant defence. UDP-glucosyltransferase gene FtUGT74L2 is characterized as involved in the glycosylation of emodin, a major medicinal component specific in Polygonaceae. The lower expression of FtSAGH1 and FtUGT74L2 were associated with the reduction of salicylic acid and soluble EmG owing to domestication. This first large-scale metabolome profiling in Tartary buckwheat will facilitate genetic improvement of medicinal properties and disease resistance in Tartary buckwheat.

Indexed as

FagopyrumDomesticationGene Expression Regulation, PlantGenome-Wide Association StudyHumansMetabolomePhylogenyPlant ProteinsSeedsPlant Proteinsbuckwheatdomesticationmetabolite variationmGWAStraditional medicine

Identifiers

PMID36148785
PMCPMC9829391
OpenAlexW4296805499

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.