Evidence map›Paper›PMID 36148635›Full record

ArticleClinical genetics2023

A novel variant in GATM causes idiopathic renal Fanconi syndrome and predicts progression to end-stage kidney disease.

Eleanor G Seaby, Steven Turner, David J Bunyan, Fariba Seyed-Rezai, Jonathan Essex, Rodney D Gilbert, Sarah Ennis

Open access · hybridAbstract readCase Reports
In one paragraph

Article in Clinical genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  6. An uncommon cause of hypophosphatemic rickets: Answers.Pediatric nephrology (Berlin, Germany) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Eleanor G SeabyFaculty of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0002-6814-8648
Steven TurnerFaculty of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0002-2913-7532
David J BunyanWessex Regional Genetics Laboratory, Salisbury NHS Foundation Trust, Salisbury, UK.
Fariba Seyed-RezaiFaculty of Medicine, University of Southampton, Southampton, UK.
Jonathan EssexSchool of Chemistry, University of Southampton, Southampton, UK.ORCID 0000-0003-2639-2746
Rodney D GilbertFaculty of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0001-7426-0188
Sarah EnnisFaculty of Medicine, University of Southampton, Southampton, UK.ORCID 0000-0003-2648-0869
University of Southampton · GBBroad Institute · USSouthampton Children's Hospital · GBWessex Regional Genetics Laboratory · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Renal Fanconi syndrome (RFS) is a generalised disorder of the proximal convoluted tubule. Many genes have been associated with RFS including those that cause systemic disorders such as cystinosis, as well as isolated RFS. We discuss the case of a 10-year-old female who presented with leg pain and raised creatinine on a screening blood test. Her mother has RFS and required a kidney transplant in her thirties. Further investigations confirmed RFS in the daughter. Exome sequencing was performed on the affected mother, child, and unaffected father. We identified a novel variant in GATM; c.965G>C p.(Arg322Pro) segregating dominantly in the mother and daughter. We validated our finding with molecular dynamics simulations and demonstrated a dynamic signature that differentiates our variant and two previously identified pathogenic variants in GATM from wildtype. Genetic testing has uncovered a novel pathogenic variant that predicts progression to end stage kidney failure and has important implications for family planning and cascade testing. We recommend that GATM is screened for in children presenting with RFS, in addition to adults, particularly with kidney failure, who may have had previous negative gene testing.

Indexed as

Fanconi SyndromeKidney Failure, ChronicAdultCausalityChildFemaleGenetic TestingHumansend-stage kidney diseaseexome sequencinggeneticsmolecular dynamicsrenal Fanconi syndrome

Identifiers

PMID36148635
PMCPMC10092499
OpenAlexW4296799456

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.