Evidence map›Paper›PMID 36146724›Full record

ArticleViruses2022

SARS-CoV-2 Infections in Vaccinated and Unvaccinated Populations in Camp Lemonnier, Djibouti, from April 2020 to January 2022.

Catherine E Arnold, Logan J Voegtly, Emily K Stefanov, Matthew R Lueder, Andrea E Luquette, Robin H Miller, Haven L Miner, Andrew J Bennett, Lindsay Glang, Tara N McGinnis and 11 more

Abstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Catherine E ArnoldNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.ORCID 0000-0002-1635-4941
Logan J VoegtlyNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.ORCID 0000-0003-0580-3702
Emily K StefanovU.S. Naval Medical Research Unit No. 3 (NAMRU-3), 95030 Sigonella, Italy.
Matthew R LuederNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Andrea E LuquetteNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Robin H MillerNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Haven L MinerNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Andrew J BennettNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Lindsay GlangNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Tara N McGinnisExpeditionary Medical Facility, CLDJ-HOA, Camp Lemonnier 09622, Djibouti.
Kristie E ReisingerNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Jae W DuganExpeditionary Medical Facility, CLDJ-HOA, Camp Lemonnier 09622, Djibouti.
Michael A MangatU.S. Naval Medical Research Unit No. 3 (NAMRU-3), 95030 Sigonella, Italy.
Daniel J SilbergerNavy Environmental Preventive Medicine Unit-Two, Norfolk, VA 23511, USA.
Rebecca L PavlicekExpeditionary Medical Facility, CLDJ-HOA, Camp Lemonnier 09622, Djibouti.ORCID 0000-0002-7109-9576
Chaselynn M WattersNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Gregory K RiceNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Francisco MalagonNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.ORCID 0000-0002-7041-0780
Regina Z CerNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.
Stephen M EgganU.S. Naval Medical Research Unit No. 3 (NAMRU-3), 95030 Sigonella, Italy.
Kimberly A Bishop-LillyNaval Medical Research Center, Fort Detrick, Frederick, MD 21702, USA.ORCID 0000-0002-5744-8493

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The global pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has highlighted the disparity between developed and developing countries for infectious disease surveillance and the sequencing of pathogen genomes. The majority of SARS-CoV-2 sequences published are from Europe, North America, and Asia. Between April 2020 and January 2022, 795 SARS-CoV-2-positive nares swabs from individuals in the U.S. Navy installation Camp Lemonnier, Djibouti, were collected, sequenced, and analyzed. In this study, we described the results of genomic sequencing and analysis for 589 samples, the first published viral sequences for Djibouti, including 196 cases of vaccine breakthrough infections. This study contributes to the knowledge base of circulating SARS-CoV-2 lineages in the under-sampled country of Djibouti, where only 716 total genome sequences are available at time of publication. Our analysis resulted in the detection of circulating variants of concern, mutations of interest in lineages in which those mutations are not common, and emerging spike mutations.

Indexed as

COVID-19VaccinesDjiboutiGenome, ViralHumansMutationSARS-CoV-2VaccinesbioinformaticsDjiboutigenomicsSARS-CoV-2surveillance

Identifiers

PMID36146724
PMCPMC9505681

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.