Evidence map›Paper›PMID 36146660›Full record

ArticleViruses2022

Emerging Genotype IV Japanese Encephalitis Virus Outbreak in New South Wales, Australia.

Annaleise R Howard-Jones, David Pham, Neisha Jeoffreys, John-Sebastian Eden, Linda Hueston, Alison M Kesson, Vanathi Nagendra, Harsha Samarasekara, Peter Newton, Sharon C-A Chen and 4 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Detection of Japanese encephalitis virus inParasite epidemiology and control · 2026
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  13. Article
  14. Review
  15. Article
  16. The reemerging and outbreak of genotypes 4 and 5 of Japanese encephalitis virus.Frontiers in cellular and infection microbiology · 2023
    Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Annaleise R Howard-JonesCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.ORCID 0000-0002-9756-2813
David PhamCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.ORCID 0000-0002-0953-4063
Neisha JeoffreysCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
John-Sebastian EdenSydney Infectious Diseases Institute, The University of Sydney, Westmead, NSW 2145, Australia.
Linda HuestonCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Alison M KessonFaculty of Medicine and Health, University of Sydney, Camperdown, NSW 2050, Australia.
Vanathi NagendraDepartment of Microbiology and Infectious Diseases, NSW Health Pathology-Liverpool, Sydney, NSW 2170, Australia.
Harsha SamarasekaraDepartment of Microbiology, Orange Base Hospital, Orange, NSW 2800, Australia.ORCID 0000-0002-6482-9649
Peter NewtonMicrobiology, NSW Health Pathology-Wollongong, Wollongong Hospital, Wollongong, NSW 2500, Australia.
Sharon C-A ChenCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Matthew V O'SullivanCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Susan MaddocksCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Dominic E DwyerCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.
Jen KokCentre for Infectious Diseases & Microbiology Laboratory Services, New South Wales Health Pathology-Institute of Clinical Pathology and Medical Research, Westmead Hospital, Westmead, NSW 2145, Australia.ORCID 0000-0002-8796-283X
The University of Sydney · AUWestmead Hospital · AUNepean Hospital · AUNew South Wales Department of Health · AUWollongong Hospital · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The detection of a new and unexpected Japanese encephalitis virus (JEV) outbreak in March 2022 in Australia, where JEV is not endemic, demanded the rapid development of a robust diagnostic framework to facilitate the testing of suspected patients across the state of New South Wales (NSW). This nascent but comprehensive JEV diagnostic service encompassed serological, molecular and metagenomics testing within a centralised reference laboratory. Over the first three months of the outbreak (4 March 2022 to 31 May 2022), 1,061 prospective samples were received from 878 NSW residents for JEV testing. Twelve confirmed cases of Japanese encephalitis (JE) were identified, including ten cases diagnosed by serology alone, one case by metagenomic next generation sequencing and real-time polymerase chain reaction (RT-PCR) of brain tissue and serology, and one case by RT-PCR of cerebrospinal fluid, providing an incidence of JE over this period of 0.15/100,000 persons in NSW. As encephalitis manifests in <1% of cases of JEV infection, the population-wide prevalence of JEV infection is likely to be substantially higher. Close collaboration with referring laboratories and clinicians was pivotal to establishing successful JEV case ascertainment for this new outbreak. Sustained and coordinated animal, human and environmental surveillance within a OneHealth framework is critical to monitor the evolution of the current outbreak, understand its origins and optimise preparedness for future JEV and arbovirus outbreaks.

Indexed as

Encephalitis, JapaneseEncephalitis Virus, JapaneseAnimalsAustraliaDisease OutbreaksGenotypeHumansNew South WalesProspective StudiesflavivirusJapanese encephalitismetagenomicsmolecular diagnosticsnucleic acid testingoutbreakserology

Identifiers

PMID36146660
PMCPMC9505215
OpenAlexW4293213088

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.