Evidence map›Paper›PMID 36144244›Full record

ArticleMetabolites2022

Identification of the Transcription Factor ATF3 as a Direct and Indirect Regulator of the LDLR.

Sabine Bauer, Jana Eigenmann, Yuqi Zhao, Julia Fleig, Johann S Hawe, Calvin Pan, Dario Bongiovanni, Simon Wengert, Angela Ma, Aldons J Lusis and 5 more

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
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  4. A Functional Variant Alters the Binding ofAnimals : an open access journal from MDPI · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 5 countries.

Sabine BauerDepartment of Cardiology, German Heart Centre Munich, Technical University Munich, 80636 Munich, Germany.ORCID 0000-0001-7929-8417
Jana EigenmannDepartment of Cardiology, German Heart Centre Munich, Technical University Munich, 80636 Munich, Germany.
Yuqi ZhaoDepartment of Integrative Biology and Physiology, Institute for Quantitative and Computational Biosciences, David Geffen School of Medicine, University of California, Los Angeles, CA 90095, USA.
Julia FleigDepartment of Cardiology, German Heart Centre Munich, Technical University Munich, 80636 Munich, Germany.
Johann S HaweDepartment of Cardiology, German Heart Centre Munich, Technical University Munich, 80636 Munich, Germany.ORCID 0000-0003-3890-303X
Calvin PanDepartments of Medicine, Human Genetics, Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California, Los Angeles, CA 90095, USA.
Dario BongiovanniDZHK (German Centre for Cardiovascular Research), Partner Site Munich Heart Alliance, 80802 Munich, Germany.ORCID 0000-0002-4162-1482
Simon WengertHelmholtz Pioneer Campus, Helmholtz Center Munich, 85764 Neuherberg, Germany.
Angela MaDepartment of Genetics and Genomic Sciences, Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Aldons J LusisDepartments of Medicine, Human Genetics, Microbiology, Immunology and Molecular Genetics, David Geffen School of Medicine, University of California, Los Angeles, CA 90095, USA.
Jason C KovacicVictor Chang Cardiac Research Institute, Darlinghurst, Sydney, NSW 2010, Australia.
Johan L M BjörkegrenDepartment of Genetics and Genomic Sciences, Institute of Genomics and Multiscale Biology, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Lars MaegdefesselDZHK (German Centre for Cardiovascular Research), Partner Site Munich Heart Alliance, 80802 Munich, Germany.
Heribert SchunkertDepartment of Cardiology, German Heart Centre Munich, Technical University Munich, 80636 Munich, Germany.ORCID 0000-0001-6428-3001
Moritz von ScheidtDepartment of Cardiology, German Heart Centre Munich, Technical University Munich, 80636 Munich, Germany.ORCID 0000-0001-7159-8271
Deutsches Herzzentrum München · DEGerman Centre for Cardiovascular Research · DEUniversity of California, Los Angeles · USEnte Ospedaliero Cantonale · CHHelmholtz Zentrum München · DEIcahn School of Medicine at Mount Sinai · USKarolinska Institutet · SEQB3 · USTUM Klinikum · DEVictor Chang Cardiac Research Institute · AU

Funding

Systems Genetics Dissection of Non-alcoholic SteatohepatitisR01DK117850 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Aldons Jake Lusis · 2019 to 2026
$4.6M
Systems genetics approach to inflammatory mechanisms in atherosclerosisR01HL147883 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 2019 to 2022
$3.0M
Establishing mechanistic links between the gut microbiome and atherosclerosisR01HL148577 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI LUSIS, ALDONS JAKE, REY, FEDERICO E · 2020 to 2023
$2.6M
Gut microbiota and metabolite interactions in atherosclerosisR01HL144651 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE, REY, FEDERICO E · 2019 to 2022
$2.6M
NHLBI NIH HHS R01 HL144651NHLBI NIH HHS R01 HL147883NHLBI NIH HHS R01 HL148577NIDDK NIH HHS R01 DK117850
6 · The paper itself

Abstract

Coronary artery disease (CAD) is a complex, multifactorial disease caused, in particular, by inflammation and cholesterol metabolism. At the molecular level, the role of tissue-specific signaling pathways leading to CAD is still largely unexplored. This study relied on two main resources: (1) genes with impact on atherosclerosis/CAD, and (2) liver-specific transcriptome analyses from human and mouse studies. The transcription factor activating transcription factor 3 (ATF3) was identified as a key regulator of a liver network relevant to atherosclerosis and linked to inflammation and cholesterol metabolism. ATF3 was predicted to be a direct and indirect (via MAF BZIP Transcription Factor F (MAFF)) regulator of low-density lipoprotein receptor (LDLR). Chromatin immunoprecipitation DNA sequencing (ChIP-seq) data from human liver cells revealed an ATF3 binding motif in the promoter regions of MAFF and LDLR. siRNA knockdown of ATF3 in human Hep3B liver cells significantly upregulated LDLR expression (p < 0.01). Inflammation induced by lipopolysaccharide (LPS) stimulation resulted in significant upregulation of ATF3 (p < 0.01) and subsequent downregulation of LDLR (p < 0.001). Liver-specific expression data from human CAD patients undergoing coronary artery bypass grafting (CABG) surgery (STARNET) and mouse models (HMDP) confirmed the regulatory role of ATF3 in the homeostasis of cholesterol metabolism. This study suggests that ATF3 might be a promising treatment candidate for lowering LDL cholesterol and reducing cardiovascular risk.

Indexed as

ATF3atherosclerosiscardiovascular diseasecoronary artery diseasegene expressioninflammationLDLRlipid metabolismliver metabolismLPSMAFFtranscription factor

Identifiers

PMID36144244
PMCPMC9504235
OpenAlexW4294845616

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.