Evidence map›Paper›PMID 36142875›Full record

ArticleInternational journal of molecular sciences2022

Gene Expression and DNA Methylation in Human Papillomavirus Positive and Negative Head and Neck Squamous Cell Carcinomas.

Snežana Hinić, April Rich, Nicole V Anayannis, Stephanie Cabarcas-Petroski, Laura Schramm, Patricio I Meneses

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Snežana HinićDepartment of Biological Sciences, Fordham University, Bronx, NY 10458, USA.
April RichDepartment of Biological Sciences, Fordham University, Bronx, NY 10458, USA.
Nicole V AnayannisDepartment of Biological Sciences, Fordham University, Bronx, NY 10458, USA.
Stephanie Cabarcas-PetroskiBiology Department, Pennsylvania State University, Beaver Campus, Monaca, PA 15061, USA.ORCID 0000-0002-2310-5273
Laura SchrammDepartment of Biological Sciences, St. John's University, Queens, NY 11439, USA.ORCID 0000-0002-3587-2912
Patricio I MenesesDepartment of Biological Sciences, Fordham University, Bronx, NY 10458, USA.
Fordham University · USPennsylvania State University · USRadboud University Nijmegen · NLSt. John's University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-risk human papillomaviruses (HPV) are important agents, responsible for a large percentage of the 745,000 cases of head and neck squamous cell carcinomas (HNSCC), which were identified worldwide in 2020. In addition to being virally induced, tobacco and heavy alcohol consumption are believed to cause DNA damage contributing to the high number of HNSCC cases. Gene expression and DNA methylation differ between HNSCC based on HPV status. We used publicly available gene expression and DNA methylation profiles from the Cancer Genome Atlas and compared HPV positive and HPV negative HNSCC groups. We used differential gene expression analysis, differential methylation analysis, and a combination of these two analyses to identify the differences. Differential expression analysis identified 1854 differentially expressed genes, including

Indexed as

AlphapapillomavirusCarcinoma, Squamous CellHead and Neck NeoplasmsPapillomavirus InfectionsDNA MethylationGene ExpressionHumansPapillomaviridaeProliferating Cell Nuclear AntigenProto-Oncogene Proteins c-bcl-2Squamous Cell Carcinoma of Head and NeckTNF Receptor-Associated Factor 1TNF Receptor-Associated Factor 2Proliferating Cell Nuclear AntigenProto-Oncogene Proteins c-bcl-2TNF Receptor-Associated Factor 1TNF Receptor-Associated Factor 2cancergene expressionhead and neck cancerHPVmethylation

Identifiers

PMID36142875
PMCPMC9504918
OpenAlexW4296462643

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.