Evidence map›Paper›PMID 36140792›Full record

ArticleGenes2022

Genomic Evolution of ST11 Carbapenem-Resistant

Na Zhang, Yue Tang, Xiaojing Yang, Meiling Jin, Jiali Chen, Shiyu Qin, Fangni Liu, Xiong Liu, Jinpeng Guo, Changjun Wang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Na ZhangSchool of Public Health, China Medical University, Shenyang 110122, China.
Yue TangDepartment of Emergency Response, Chinese PLA Center for Disease Control and Prevention, Beijing 100071, China.
Xiaojing YangSchool of Public Health, China Medical University, Shenyang 110122, China.
Meiling JinSchool of Public Health, China Medical University, Shenyang 110122, China.
Jiali ChenSchool of Public Health, China Medical University, Shenyang 110122, China.
Shiyu QinDepartment of Emergency Response, Chinese PLA Center for Disease Control and Prevention, Beijing 100071, China.
Fangni LiuSchool of Public Health, China Medical University, Shenyang 110122, China.
Xiong LiuDepartment of Information, Chinese PLA Center for Disease Control and Prevention, Beijing 100071, China.
Jinpeng GuoDepartment of Emergency Response, Chinese PLA Center for Disease Control and Prevention, Beijing 100071, China.
Changjun WangSchool of Public Health, China Medical University, Shenyang 110122, China.
Yong ChenDepartment of Emergency Response, Chinese PLA Center for Disease Control and Prevention, Beijing 100071, China.
China Medical University · CNZhengzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

(1) Objective: ST11 carbapenem-resistant Klebsiella pneumoniae (CRKP) is widespread throughout the world, and the mechanisms for the transmission and evolution of major serotypes, ST11-KL47 and ST11-KL64, were analyzed to investigate the global distribution and evolutionary characteristics of ST11 CRKP; (2) Methods: The Pathosystems Resource Integration Center (PATRIC) database was downloaded and all K. pneumoniae from 2011 to 2020 were screened to obtain ST11 CRKP genome assemblies with basic information. The relationship of serotype evolution between KL47 and KL64 was then investigated using statistical and bioinformatic analysis; (3) Results: In total, 386 ST11 CRKP isolates were included for analysis. Blood (31.09%, 120/386), respiratory tract (23.06%, 89/386), and feces (20.21%, 78/386) were the major sources of samples. China was the leading country where ST11 CRKP was isolated. KL47 and KL64 were found to be the most prevalent serotypes. ST11-KL64 CRKP [median 78(P25~P75: 72~79.25)] had remarkably more virulence genes than the KL47 [median 63(P25~P75: 63~69)], and the distinction was statistically significant (p < 0.001). A differential comparison of virulence genes between KL47 and KL64 revealed 35 differential virulence genes, including rmpA/rmpA2, iucABCD, iutA, etc. The comparison of the recombination of serotype-determining regions between the two serotypes revealed that KL64 CRKP carried more nucleotide sequences in the CD1-VR2-CD2 region than KL47 CRKP. More nucleotide sequences added approximately 303 base pairs (bp) with higher GC content (58.14%), which might facilitate the evolution of the serotype toward KL64; (4) Conclusions: KL47 and KL64 have become the predominant serotypes of ST11 CRKP. KL64 CRKP carries more virulence genes than KL47 and has increased by approximately 303 bp through recombinant mutations, thus facilitating the evolution of KL47 to KL64. Stricter infection prevention and control measures should be developed to deal with the epidemic transmission of ST11-KL64 CRKP.

Indexed as

Carbapenem-Resistant EnterobacteriaceaeKlebsiella InfectionsAnti-Bacterial AgentsCarbapenemsEvolution, MolecularHumansKlebsiella pneumoniaeMultilocus Sequence TypingAnti-Bacterial AgentsCarbapenemsdistribution characteristicsevolutionglobalserotypewhole-genome sequence

Identifiers

PMID36140792
PMCPMC9498433
OpenAlexW4295886896

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.