Evidence map›Paper›PMID 36140738›Full record

ArticleGenes2022

Genome-Wide Identification and Analysis of the R2R3-MYB Gene Family in

Junhong Du, Qianqian Zhang, Sijia Hou, Jing Chen, Jianqiao Meng, Cong Wang, Dan Liang, Rongling Wu, Yunqian Guo

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Junhong DuCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Qianqian ZhangChinese Institute for Brain Research, Beijing 102206, China.
Sijia HouCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Jing ChenCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Jianqiao MengCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Cong WangCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Dan LiangCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Rongling WuCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Yunqian GuoCenter for Computational Biology, College of Biological Science and Technology, National Engineering Laboratory for Tree Breeding, Beijing Forestry University, Beijing 100083, China.
Beijing Forestry University · CNChinese Institute for Brain Research · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The MYB gene family is involved in the regulation of plant growth, development and stress responses. In this paper, to identify Theobroma cacao R2R3-MYB (TcMYB) genes involved in environmental stress and phytohormones, we conducted a genome-wide analysis of the R2R3-MYB gene family in Theobroma cacao (cacao). A total of 116 TcMYB genes were identified, and they were divided into 23 subgroups according to the phylogenetic analysis. Meanwhile, the conserved motifs, gene structures and cis-acting elements of promoters were analyzed. Moreover, these TcMYB genes were distributed on 10 chromosomes. We conducted a synteny analysis to understand the evolution of the cacao R2R3-MYB gene family. A total of 37 gene pairs of TcMYB genes were identified through tandem or segmental duplication events. Additionally, we also predicted the subcellular localization and physicochemical properties. All the studies showed that TcMYB genes have multiple functions, including responding to environmental stresses. The results provide an understanding of R2R3-MYB in Theobroma cacao and lay the foundation for a further functional analysis of TcMYB genes in the growth of cacao.

Indexed as

CacaoGenes, mybMultigene FamilyPhylogenyPlant Growth RegulatorsPlant ProteinsTranscription FactorsPlant Growth RegulatorsPlant ProteinsTranscription Factorsbioinformaticsgene familygenome-wide characterizationR2R3-MYB transcription factorsTheobroma cacao

Identifiers

PMID36140738
PMCPMC9498333
OpenAlexW4294151752

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.