Evidence map›Paper›PMID 36140669›Full record

ArticleGenes2022

A Novel Hypoxia Related Marker in Blood Link to Aid Diagnosis and Therapy in Osteoarthritis.

Shunhan Yao, Meiling Deng, Xiaojing Du, Rongzhi Huang, Qingfeng Chen

Abstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Shunhan YaoMedical College, Guangxi University, Nanning 530000, China.ORCID 0000-0001-8821-633X
Meiling DengSchool of Information and Management, Guangxi Medical University, Nanning 530000, China.
Xiaojing DuSchool of Computer, Electronic and Information, Guangxi University, Nanning 530000, China.
Rongzhi HuangTraumatic Orthopedic Hand Surgery, The First People's Hospital of Qinzhou, Qinzhou 535000, China.
Qingfeng ChenSchool of Computer, Electronic and Information, Guangxi University, Nanning 530000, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Osteoarthritis (OA) is a common chronic degenerative arthritis. Its treatment options are very limited. At present, hypoxia is a prominent factor in OA. This study aimed to re-explore the mechanism between hypoxia and OA, which provides new insights into the diagnosis and therapy of OA. We acquired the OA-related expression profiles of GSE48556, GSE55235, and GSE55457 for our analysis. Using gene set variation analysis (GSVA), we found significant differences in hypoxia. These differences result from multiple pathways, such as the p53 signaling pathway, cell senescence, the NF-kappa B signaling pathway, Ubiquitin-mediated proteolysis, and apoptosis. Meanwhile, the single-sample gene set enrichment analysis (ssGSEA) showed that hypoxia was significantly associated with the level of immune cell infiltration in the immune microenvironment. Thus, we believe that hypoxia is useful for the diagnosis and treatment of OA. We successfully constructed a novel hypoxia-related index (HRI) based on seven hypoxia-related genes (ADM, CDKN3, ENO1, NDRG1, PGAM1, SLC2A1, VEGFA) by least absolute shrinkage and binary logistic regression of the generalized linear regression. HRI showed potential for improving OA diagnosis through receiver operation characteristic (ROC) analysis (AUC training cohort = 0.919, AUC testing cohort = 0.985). Moreover, we found that celastrol, droxinostat, torin-2, and narciclasine may be potential therapeutic compounds for OA based on the Connectivity Map (CMap). In conclusion, hypoxia is involved in the development and progression of OA. HRI can improve diagnosis and show great potential in clinical application. Celastrol, droxinostat, torin-2, and narciclasine may be potential compounds for the treatment of OA patients.

Indexed as

NF-kappa BOsteoarthritisAmaryllidaceae AlkaloidsBiomarkersHumansHydroxamic AcidsHypoxiaPentacyclic TriterpenesPhenanthridinesTumor Suppressor Protein p53Ubiquitins4-(4-chloro-2-methylphenoxy)-N-hydroxybutanamideAmaryllidaceae AlkaloidsBiomarkerscelastrolHydroxamic AcidsnarciclasineNF-kappa BPentacyclic TriterpenesPhenanthridinesTumor Suppressor Protein p53Ubiquitinshypoxiaimmune microenvironmentnovel hypoxia-related indexosteoarthritis

Identifiers

PMID36140669
PMCPMC9498462

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.