ArticleAnimals : an open access journal from MDPI2022
Genome-Wide Diversity Analysis of African Swine Fever Virus Based on a Curated Dataset.
Article in Animals : an open access journal from MDPI, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 13 citations in OpenAlex.
- Identification of B-Cell Linear Epitopes on pE146L Protein of African Swine Fever Virus Using Monoclonal Antibodies.Microorganisms · 2026Article
- Current Insights into the Epidemiology and Transmission Dynamics of African Swine Fever Virus and Future Control Perspectives.Pathogens (Basel, Switzerland) · 2026Review
- Comprehensive molecular profiling of the African swine fever virus in Korean wild boars between 2019 and 2024.Veterinary research · 2026Article
- ANASFV: a workflow for African swine fever virus whole-genome analysis.Microbial genomics · 2025Article
- The Comparative Full-Length Genome Characterization of African Swine Fever Virus Detected in Thailand.Animals : an open access journal from MDPI · 2024Article
- Article
- Genetic analysis reveals multiple intergenic region and central variable region in the African swine fever virus variants circulating in Serbia.Veterinary research communications · 2023Article
- Comparison of the Whole-Genome Sequence of the African Swine Fever Virus from a Mongolian Wild Boar with Genotype II Viruses from Asia and Europe.Pathogens (Basel, Switzerland) · 2023Article
- Emergence and Prevalence of an African Swine Fever Virus Variant in Wild Boar Populations in South Korea from 2019 to 2022.Viruses · 2023Article
- Article
- Complete genome analysis of African swine fever virus genotypes II, IX and XV from domestic pigs in Tanzania.Scientific reports · 2023Article
- Patterns of ASFV Transmission in Domestic Pigs in Serbia.Pathogens (Basel, Switzerland) · 2023Article
- Tracing the Origin of Genotype II African Swine Fever Virus in China by Genomic Epidemiology Analysis.Transboundary and emerging diseases · 2023Article
- Comparative genomic and transcriptomic analyses of African swine fever virus strains.Computational and structural biotechnology journal · 2023Article
Corrections and comments
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Authors and funding
9 authors at 3 institutions in 1 country.
Funding
Abstract
African swine fever (ASF) is a lethal contagious viral disease of domestic pigs and wild boars caused by the African swine fever virus (ASFV). The pandemic spread of ASF has had serious effects on the global pig industry. Virus genome sequencing and comparison play an important role in tracking the outbreaks of the disease and tracing the transmission of the virus. Although more than 140 ASFV genome sequences have been deposited in the public databases, the genome-wide diversity of ASFV remains unclear. Here we prepared a curated dataset of ASFV genome sequences by filtering genomes with sequencing errors as well as duplicated genomes. A total of 123 ASFV genome sequences were included in the dataset, representing 10 genotypes collected between 1949 and 2020. Phylogenetic analysis based on whole-genome sequences provided high-resolution topology in differentiating closely related ASFV isolates, and drew new clues in the classification of some ASFV isolates. Genome-wide diversity of ASFV genomes was explored by pairwise sequence similarity comparison and ORF distribution comparison. Tandem repeat sequences were found widely distributed and highly varied in ASFV genomes. Structural variation and highly variable poly G or poly C tracts also contributed to the genome diversity. This study expanded our knowledge on the patterns of genetic diversity and evolution of ASFV, and provided valuable information for diagnosis improvement and vaccine development.
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