Evidence map›Paper›PMID 36138781›Full record

ArticleBiology2022

pH-Dependent Compaction of the Intrinsically Disordered Poly-E Motif in Titin.

Sophia Manukian, Gerrick E Lindberg, Emily Punch, Sudarshi Premawardhana Dassanayake Mudiyanselage, Matthew J Gage

Abstract read
In one paragraph

Article in Biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sophia ManukianDepartment of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
Gerrick E LindbergDepartment of Applied Physics and Materials Science and Department of Chemistry and Biochemistry, Northern Arizona University, Flagstaff, AZ 86011, USA.ORCID 0000-0002-5292-4200
Emily PunchDepartment of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
Sudarshi Premawardhana Dassanayake MudiyanselageDepartment of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
Matthew J GageDepartment of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.ORCID 0000-0003-2304-6960

Funding

Exploring the role of pH in protein conformational change and muscle elasticityR15GM132840 · NIGMS · UNIVERSITY OF MASSACHUSETTS LOWELL · PI GAGE, MATTHEW J · 2019 to 2019
$457k
NIGMS NIH HHS R15 GM132840NIH HHS R15GM132840-01
6 · The paper itself

Abstract

The conformational sensitivity of intrinsically disordered proteins to shifts in pH due to their high degree of charged residues has been recognized for well over a decade. However, the role of the non-ionizable residues in this pH sensitivity remains poorly understood. Our lab has been investigating the pH sensitivity of the poly-E motifs of the PEVK region of the muscle protein titin, which provides an ideal model system to explore this question. Using a series of 15-amino acid peptides derived from one of the poly-E motif sequences, we have investigated the role of side-chain chemistry in the conformational flexibility of this region. Our results demonstrate that aromatic side chains and proline content are the two variables that most influence pH sensitivity. The introduction of aromatic side chains resulted in a more collapsed structure, even at pH 7, while the removal of prolines resulted in a higher degree of pH sensitivity. These results highlight the importance of considering the impact of non-ionizable residues on IDP function, especially when considering the impact of pH on conformational flexibility.

Indexed as

circular dichroismconformational changeintrinsically disordered proteinsPEVKtitin

Identifiers

PMID36138781
PMCPMC9495361

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.