Evidence map›Paper›PMID 36138004›Full record

ArticleNature communications2022

Endocytosis-like DNA uptake by cell wall-deficient bacteria.

Renée Kapteijn, Shraddha Shitut, Dennis Aschmann, Le Zhang, Marit de Beer, Deniz Daviran, Rona Roverts, Anat Akiva, Gilles P van Wezel, Alexander Kros and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Renée KapteijnInstitute of Biology, Leiden University, Sylviusweg 72, 2333, Leiden, The Netherlands.ORCID 0000-0003-4813-0157
Shraddha ShitutInstitute of Biology, Leiden University, Sylviusweg 72, 2333, Leiden, The Netherlands.
Dennis AschmannDepartment of Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333, Leiden, The Netherlands.
Le ZhangInstitute of Biology, Leiden University, Sylviusweg 72, 2333, Leiden, The Netherlands.
Marit de BeerElectron Microscopy Center, Radboudumc Technology Center Microscopy, Nijmegen, The Netherlands.ORCID 0000-0002-0630-4182
Deniz DaviranElectron Microscopy Center, Radboudumc Technology Center Microscopy, Nijmegen, The Netherlands.ORCID 0000-0003-3229-1255
Rona RovertsElectron Microscopy Center, Radboudumc Technology Center Microscopy, Nijmegen, The Netherlands.ORCID 0000-0002-0967-6694
Anat AkivaElectron Microscopy Center, Radboudumc Technology Center Microscopy, Nijmegen, The Netherlands.ORCID 0000-0003-0414-889X
Gilles P van WezelInstitute of Biology, Leiden University, Sylviusweg 72, 2333, Leiden, The Netherlands. G.Wezel@biology.leidenuniv.nl.ORCID 0000-0003-0341-1561
Alexander KrosDepartment of Supramolecular and Biomaterials Chemistry, Leiden Institute of Chemistry, Leiden University, Einsteinweg 55, 2333, Leiden, The Netherlands.ORCID 0000-0002-3983-3048
Dennis ClaessenInstitute of Biology, Leiden University, Sylviusweg 72, 2333, Leiden, The Netherlands. D.Claessen@biology.leidenuniv.nl.ORCID 0000-0002-0789-2633
Leiden University · NLRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Horizontal gene transfer in bacteria is widely believed to occur via conjugation, transduction and transformation. These mechanisms facilitate the passage of DNA across the protective cell wall using sophisticated machinery. Here, we report that cell wall-deficient bacteria can engulf DNA and other extracellular material via an endocytosis-like process. Specifically, we show that L-forms of the filamentous actinomycete Kitasatospora viridifaciens can take up plasmid DNA, polysaccharides (dextran) and 150-nm lipid nanoparticles. The process involves invagination of the cytoplasmic membrane, leading to formation of intracellular vesicles that encapsulate extracellular material. DNA uptake is not affected by deletion of genes homologous to comEC and comEA, which are required for natural transformation in other species. However, uptake is inhibited by sodium azide or incubation at 4 °C, suggesting the process is energy-dependent. The encapsulated materials are released into the cytoplasm upon degradation of the vesicle membrane. Given that cell wall-deficient bacteria are considered a model for early life forms, our work reveals a possible mechanism for primordial cells to acquire food or genetic material before invention of the bacterial cell wall.

Indexed as

BacteriaDextransCell WallDNADNA, BacterialEndocytosisLiposomesNanoparticlesSodium AzideDextransDNADNA, BacterialLipid NanoparticlesLiposomesSodium Azide

Identifiers

PMID36138004
PMCPMC9500057
OpenAlexW4296640266

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.