Evidence map›Paper›PMID 36137157›Full record

ArticlePloS one2022

Untargeted saliva metabolomics by liquid chromatography-Mass spectrometry reveals markers of COVID-19 severity.

Cecile F Frampas, Katie Longman, Matt Spick, Holly-May Lewis, Catia D S Costa, Alex Stewart, Deborah Dunn-Walters, Danni Greener, George Evetts, Debra J Skene and 5 more

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  14. Saliva metabolomic profile of COVID-19 patients associates with disease severity.Metabolomics : Official journal of the Metabolomic Society · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Cecile F FrampasFaculty of Engineering and Physical Sciences, University of Surrey, Guildford, United Kingdom.
Katie LongmanFaculty of Engineering and Physical Sciences, University of Surrey, Guildford, United Kingdom.
Matt SpickFaculty of Engineering and Physical Sciences, University of Surrey, Guildford, United Kingdom.ORCID 0000-0002-9417-6511
Holly-May LewisFaculty of Engineering and Physical Sciences, University of Surrey, Guildford, United Kingdom.
Catia D S CostaSurrey Ion Beam Centre, University of Surrey, Guildford, United Kingdom.
Alex StewartFaculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom.
Deborah Dunn-WaltersFaculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom.
Danni GreenerFrimley Park Hospital, Frimley Health NHS Trust, Camberley, United Kingdom.
George EvettsFrimley Park Hospital, Frimley Health NHS Trust, Camberley, United Kingdom.
Debra J SkeneFaculty of Health and Medical Sciences, University of Surrey, Guildford, United Kingdom.ORCID 0000-0001-8202-6180
Drupad TrivediManchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom.
Andy PittManchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom.
Katherine HollywoodManchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom.
Perdita BarranManchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom.
Melanie J BaileyFaculty of Engineering and Physical Sciences, University of Surrey, Guildford, United Kingdom.

Funding

Biotechnology and Biological Sciences Research Council BB/T002212/1
6 · The paper itself

Abstract

backgroundThe COVID-19 pandemic is likely to represent an ongoing global health issue given the potential for new variants, vaccine escape and the low likelihood of eliminating all reservoirs of the disease. Whilst diagnostic testing has progressed at a fast pace, the metabolic drivers of outcomes-and whether markers can be found in different biofluids-are not well understood. Recent research has shown that serum metabolomics has potential for prognosis of disease progression. In a hospital setting, collection of saliva samples is more convenient for both staff and patients, and therefore offers an alternative sampling matrix to serum.

methodsSaliva samples were collected from hospitalised patients with clinical suspicion of COVID-19, alongside clinical metadata. COVID-19 diagnosis was confirmed using RT-PCR testing, and COVID-19 severity was classified using clinical descriptors (respiratory rate, peripheral oxygen saturation score and C-reactive protein levels). Metabolites were extracted and analysed using high resolution liquid chromatography-mass spectrometry, and the resulting peak area matrix was analysed using multivariate techniques.

resultsPositive percent agreement of 1.00 between a partial least squares-discriminant analysis metabolomics model employing a panel of 6 features (5 of which were amino acids, one that could be identified by formula only) and the clinical diagnosis of COVID-19 severity was achieved. The negative percent agreement with the clinical severity diagnosis was also 1.00, leading to an area under receiver operating characteristics curve of 1.00 for the panel of features identified.

conclusionsIn this exploratory work, we found that saliva metabolomics and in particular amino acids can be capable of separating high severity COVID-19 patients from low severity COVID-19 patients. This expands the atlas of COVID-19 metabolic dysregulation and could in future offer the basis of a quick and non-invasive means of sampling patients, intended to supplement existing clinical tests, with the goal of offering timely treatment to patients with potentially poor outcomes.

Indexed as

COVID-19Amino AcidsBiomarkersChromatography, LiquidCOVID-19 TestingC-Reactive ProteinHumansMass SpectrometryMetabolomicsPandemicsSalivaAmino AcidsBiomarkersC-Reactive Protein

Identifiers

PMID36137157
PMCPMC9498978

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.