Evidence map›Paper›PMID 36136759›Full record

ArticleHuman molecular genetics2023

GWAS of genetic factors affecting white blood cell morphological parameters in Sardinians uncovers influence of chromosome 11 innate immunity gene cluster on eosinophil morphology.

Michele Marongiu, Gonzalo Pérez-Mejías, Valeria Orrù, Maristella Steri, Carlo Sidore, Antonio Díaz-Quintana, Antonella Mulas, Fabio Busonero, Andrea Maschio, Klaudia Walter and 9 more

Open access · greenAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 6 institutions in 4 countries.

Michele MarongiuIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.ORCID 0000-0002-7289-9815
Gonzalo Pérez-MejíasInstituto de Investigaciones Químicas (IIQ)- Centro de Investigaciones Científicas Isla de la Cartuja (cicCartuja), Universidad de Sevilla-CSIC, 41092 Sevilla, Spain.
Valeria OrrùIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Maristella SteriIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Carlo SidoreIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Antonio Díaz-QuintanaInstituto de Investigaciones Químicas (IIQ)- Centro de Investigaciones Científicas Isla de la Cartuja (cicCartuja), Universidad de Sevilla-CSIC, 41092 Sevilla, Spain.ORCID 0000-0001-8973-8009
Antonella MulasIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Fabio BusoneroIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Andrea MaschioIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Klaudia WalterHuman Genetics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, Cambridge, UK.
Manuel TardaguilaHuman Genetics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, Cambridge, UK.
Parsa AkbariHuman Genetics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, Cambridge, UK.
Nicole SoranzoHuman Genetics, Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, Cambridge, UK.
Edoardo FiorilloIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Myriam GorospeLaboratory of Genetics and Genomics, National Institute on Aging (NIA), National Institutes of Health (NIH), Baltimore, MD 21224, USA.
David SchlessingerBritish Heart Foundation Cardiovascular Epidemiology Unit, Department of Public Health and Primary Care, University of Cambridge, Strangeways Research Laboratory, Wort's Causeway, Cambridge CB1 8RN, UK.
Irene Díaz-MorenoInstituto de Investigaciones Químicas (IIQ)- Centro de Investigaciones Científicas Isla de la Cartuja (cicCartuja), Universidad de Sevilla-CSIC, 41092 Sevilla, Spain.
Francesco CuccaIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.
Magdalena ZoledziewskaIstituto di Ricerca Genetica e Biomedica (IRGB), Consiglio Nazionale delle Ricerche (CNR), 09042 Monserrato, Sardinia, Italy.ORCID 0000-0002-3033-6133
Institute of Genetic and Biomedical Research · ITCentro de Investigaciones Científicas Isla de la Cartuja · ESUniversity of Cambridge · GBWellcome Sanger Institute · GBNational Institutes of Health · USUniversity of Sassari · IT

Funding

Post-transcriptional Regulation Of Proliferative and Stress Response GenesZIAAG000511 · NIA · NATIONAL INSTITUTE ON AGING · PI GOROSPE, MYRIAM · 2009 to 2025
$25.4M
Influence of Post-transcriptional Gene Regulation on Cell Senescence and AgingZIAAG000393 · NIA · NATIONAL INSTITUTE ON AGING · PI GOROSPE, MYRIAM · 2009 to 2025
$24.1M
GENETICS & EPIDEMIOLOGY OF AGAING - ASSOCIATED CONDITIONS IN THE SARDINIAN POPULN01AG12109 · NIA · CONSIGLIO NAZIONALE DELLE RICERCHE · PI UDA, MANUELA · 2007 to 2011
$7.8M
NIA NIH HHS N01AG12109NIDA NIH HHS HHSN271201100005C
6 · The paper itself

Abstract

Few genome-wide association studies (GWAS) analyzing genetic regulation of morphological traits of white blood cells have been reported. We carried out a GWAS of 12 morphological traits in 869 individuals from the general population of Sardinia, Italy. These traits, included measures of cell volume, conductivity and light scatter in four white-cell populations (eosinophils, lymphocytes, monocytes, neutrophils). This analysis yielded seven statistically significant signals, four of which were novel (four novel, PRG2, P2RX3, two of CDK6). Five signals were replicated in the independent INTERVAL cohort of 11 822 individuals. The most interesting signal with large effect size on eosinophil scatter (P-value = 8.33 x 10-32, beta = -1.651, se = 0.1351) falls within the innate immunity cluster on chromosome 11, and is located in the PRG2 gene. Computational analyses revealed that a rare, Sardinian-specific PRG2:p.Ser148Pro mutation modifies PRG2 amino acid contacts and protein dynamics in a manner that could possibly explain the changes observed in eosinophil morphology. Our discoveries shed light on genetics of morphological traits. For the first time, we describe such large effect size on eosinophils morphology that is relatively frequent in Sardinian population.

Indexed as

EosinophilsGenome-Wide Association StudyChromosomes, Human, Pair 11HumansImmunity, InnatePolymorphism, Single Nucleotide

Identifiers

PMID36136759
PMCPMC9941829
OpenAlexW4296908165

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.