Evidence map›Paper›PMID 36135791›Full record

ArticlePlant physiology2023

Abscisic acid modulates neighbor proximity-induced leaf hyponasty in Arabidopsis.

Olivier Michaud, Johanna Krahmer, Florian Galbier, Maud Lagier, Vinicius Costa Galvão, Yetkin Çaka Ince, Martine Trevisan, Jana Knerova, Patrick Dickinson, Julian M Hibberd and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Olivier MichaudFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland.ORCID 0000-0002-3245-5873
Johanna KrahmerFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland.ORCID 0000-0001-7728-5110
Florian GalbierPlant Biochemistry, Department of Biology, ETH Zürich, Universität-Str. 2, CH-8092 Zürich, Switzerland.ORCID 0000-0002-4705-6306
Maud LagierFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland.ORCID 0000-0003-0815-8091
Vinicius Costa GalvãoFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland.ORCID 0000-0002-0973-222X
Yetkin Çaka InceFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland.ORCID 0000-0002-4395-8599
Martine TrevisanFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland.ORCID 0000-0002-6610-6954
Jana KnerovaDepartment of Plant Sciences, Downing Street, Cambridge, University of Cambridge, CB2 3EA, UK.ORCID 0000-0002-9562-4339
Patrick DickinsonDepartment of Plant Sciences, Downing Street, Cambridge, University of Cambridge, CB2 3EA, UK.ORCID 0000-0003-1510-1325
Julian M HibberdDepartment of Plant Sciences, Downing Street, Cambridge, University of Cambridge, CB2 3EA, UK.ORCID 0000-0003-0662-7958
Samuel C ZeemanPlant Biochemistry, Department of Biology, ETH Zürich, Universität-Str. 2, CH-8092 Zürich, Switzerland.ORCID 0000-0002-2791-0915
Christian FankhauserFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne CH-1015, Switzerland.ORCID 0000-0003-4719-5901
University of Lausanne · CHUniversity of Cambridge · GBETH Zurich · CH

Funding

Biotechnology and Biological Sciences Research Council BBP0031171
6 · The paper itself

Abstract

Leaves of shade-avoiding plants such as Arabidopsis (Arabidopsis thaliana) change their growth pattern and position in response to low red to far-red ratios (LRFRs) encountered in dense plant communities. Under LRFR, transcription factors of the phytochrome-interacting factor (PIF) family are derepressed. PIFs induce auxin production, which is required for promoting leaf hyponasty, thereby favoring access to unfiltered sunlight. Abscisic acid (ABA) has also been implicated in the control of leaf hyponasty, with gene expression patterns suggesting that LRFR regulates the ABA response. Here, we show that LRFR leads to a rapid increase in ABA levels in leaves. Changes in ABA levels depend on PIFs, which regulate the expression of genes encoding isoforms of the enzyme catalyzing a rate-limiting step in ABA biosynthesis. Interestingly, ABA biosynthesis and signaling mutants have more erect leaves than wild-type Arabidopsis under white light but respond less to LRFR. Consistent with this, ABA application decreases leaf angle under white light; however, this response is inhibited under LRFR. Tissue-specific interference with ABA signaling indicates that an ABA response is required in different cell types for LRFR-induced hyponasty. Collectively, our data indicate that LRFR triggers rapid PIF-mediated ABA production. ABA plays a different role in controlling hyponasty under white light than under LRFR. Moreover, ABA exerts its activity in multiple cell types to control leaf position.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeAbscisic AcidGene Expression Regulation, PlantPlant LeavesTranscription FactorsAbscisic AcidArabidopsis ProteinsPhytochromeTranscription Factors

Identifiers

PMID36135791
PMCPMC9806605
OpenAlexW4296662509

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.