Evidence map›Paper›PMID 36135680›Full record

ArticleJournal of fungi (Basel, Switzerland)2022

Diagnosis of Fungal Keratitis in Low-Income Countries: Evaluation of Smear Microscopy, Culture, and In Vivo Confocal Microscopy in Nepal.

Jeremy J Hoffman, Reena Yadav, Sandip Das Sanyam, Pankaj Chaudhary, Abhishek Roshan, Sanjay Kumar Singh, Simon Arunga, Victor H Hu, David Macleod, Astrid Leck and 1 more

Open access · goldAbstract read
In one paragraph

Article in Journal of fungi (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Jeremy J HoffmanInternational Centre for Eye Health, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.ORCID 0000-0001-9454-2131
Reena YadavSagarmatha Choudhary Eye Hospital, Lahan 56500, Nepal.
Sandip Das SanyamSagarmatha Choudhary Eye Hospital, Lahan 56500, Nepal.ORCID 0000-0002-0554-8441
Pankaj ChaudharySagarmatha Choudhary Eye Hospital, Lahan 56500, Nepal.ORCID 0000-0001-5213-4383
Abhishek RoshanSagarmatha Choudhary Eye Hospital, Lahan 56500, Nepal.
Sanjay Kumar SinghSagarmatha Choudhary Eye Hospital, Lahan 56500, Nepal.
Simon ArungaInternational Centre for Eye Health, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.
Victor H HuInternational Centre for Eye Health, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.
David MacleodInternational Centre for Eye Health, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.ORCID 0000-0002-2371-5709
Astrid LeckInternational Centre for Eye Health, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.ORCID 0000-0001-9251-2318
Matthew J BurtonInternational Centre for Eye Health, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK.
London School of Hygiene & Tropical Medicine · GBMbarara University of Science and Technology · UGMoorfields Eye Hospital NHS Foundation Trust · GB

Funding

Medical Research Council MR/R010161/1Wellcome TrustWellcome Trust 207472/Z/17/Z
6 · The paper itself

Abstract

Clinically diagnosing fungal keratitis (FK) is challenging; diagnosis can be assisted by investigations including in vivo confocal microscopy (IVCM), smear microscopy, and culture. The aim of this study was to estimate the sensitivity in detecting fungal keratitis (FK) using IVCM, smear microscopy, and culture in a setting with a high prevalence of FK. In this cross-sectional study nested within a prospective cohort study, consecutive microbial keratitis (MK) patients attending a tertiary-referral eye hospital in south-eastern Nepal between June 2019 and November 2020 were recruited. IVCM and corneal scrapes for smear microscopy and culture were performed using a standardised protocol. Smear microscopy was performed using potassium hydroxide (KOH), Gram stain, and calcofluor white. The primary outcomes were sensitivities with 95% confidence intervals [95% CI] for IVCM, smear microscopy and culture, and for each different microscopy stain independently, to detect FK compared to a composite referent. We enrolled 642 patients with MK; 468/642 (72.9%) were filamentous FK, 32/642 (5.0%) were bacterial keratitis and 64/642 (10.0%) were mixed bacterial-filamentous FK, with one yeast infection (0.16%). No organism was identified in 77/642 (12.0%). Smear microscopy had the highest sensitivity (90.7% [87.9-93.1%]), followed by IVCM (89.8% [86.9-92.3%]) and culture (75.7% [71.8-79.3%]). Of the three smear microscopy stains, KOH had the highest sensitivity (85.3% [81.9-88.4%]), followed by Gram stain (83.2% [79.7-86.4%]) and calcofluor white (79.1% [75.4-82.5%]). Smear microscopy and IVCM were the most sensitive tools for identifying FK in our cohort. In low-resource settings we recommend clinicians perform corneal scrapes for microscopy using KOH and Gram staining. Culture remains an important tool to diagnose bacterial infection, identify causative fungi and enable antimicrobial susceptibility testing.

Indexed as

corneaculturediagnosisfungal keratitisin vivo confocal microscopymicrobial keratitismicrobiologymicroscopyNepal

Identifiers

PMID36135680
PMCPMC9502267
OpenAlexW4296004274

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.