Evidence map›Paper›PMID 36133150›Full record

ArticleRoyal Society open science2022

A baseline for the genetic stock identification of Atlantic herring,

Edward D Farrell, Leif Andersson, Dorte Bekkevold, Neil Campbell, Jens Carlsson, Maurice W Clarke, Afra Egan, Arild Folkvord, Michaël Gras, Susan Mærsk Lusseau and 7 more

Abstract read
In one paragraph

Article in Royal Society open science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Methods to estimate marine functional connectivity: A primer.Ecological applications : a publication of the Ecological Society of America · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Edward D FarrellEDF Scientific Limited, Rathaha, Ladysbridge, Cork, Ireland.ORCID 0000-0002-0070-9154
Leif AnderssonDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-4085-6968
Dorte BekkevoldNational Institute of Aquatic Resources, Technical University of Denmark, Silkeborg, Denmark.ORCID 0000-0002-5297-032X
Neil CampbellMarine Scotland Science, 375 Victoria Road, Aberdeen AB11 9DB, Scotland.
Jens CarlssonArea 52 Research Group, School of Biology and Environmental Science/Earth Institute, Science Centre West, University College Dublin, Dublin, Ireland.ORCID 0000-0002-9262-5627
Maurice W ClarkeMarine Institute, Rinville, Oranmore, Co. Galway, Ireland.ORCID 0000-0002-6036-9040
Afra EganMarine Institute, Rinville, Oranmore, Co. Galway, Ireland.
Arild FolkvordDepartment of Biological Sciences, University of Bergen, Bergen, Norway.ORCID 0000-0002-4763-0590
Michaël GrasMarine Institute, Rinville, Oranmore, Co. Galway, Ireland.
Susan Mærsk LusseauMarine Scotland Science, 375 Victoria Road, Aberdeen AB11 9DB, Scotland.
Steven MackinsonScottish Pelagic Fishermen's Association, Heritage House, 135-139 Shore Street, Fraserburgh, Aberdeenshire, Scotland.
Cormac NolanMarine Institute, Rinville, Oranmore, Co. Galway, Ireland.
Steven O'ConnellMarine Scotland Science, 375 Victoria Road, Aberdeen AB11 9DB, Scotland.
Michael O'MalleyMarine Institute, Rinville, Oranmore, Co. Galway, Ireland.
Martin PastoorsPelagic Freezer-trawler Association, Louis Braillelaan 80, 2719 EK Zoetermeer, The Netherlands.
Mats E PetterssonDepartment of Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden.ORCID 0000-0002-7372-9076
Emma WhiteMarine Institute, Rinville, Oranmore, Co. Galway, Ireland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Atlantic herring in International Council for Exploration of the Sea (ICES) Divisions 6.a, 7.b-c comprises at least three populations, distinguished by temporal and spatial differences in spawning, which have until recently been managed as two stocks defined by geographical delineators. Outside of spawning the populations form mixed aggregations, which are the subject of acoustic surveys. The inability to distinguish the populations has prevented the development of separate survey indices and separate stock assessments. A panel of 45 single-nucleotide polymorphisms, derived from whole-genome sequencing, were used to genotype 3480 baseline spawning samples (2014-2021). A temporally stable baseline comprising 2316 herring from populations known to inhabit Division 6.a was used to develop a genetic assignment method, with a self-assignment accuracy greater than 90%. The long-term temporal stability of the assignment model was validated by assigning archive (2003-2004) baseline samples (270 individuals) with a high level of accuracy. Assignment of non-baseline samples (1514 individuals) from Divisions 6.a, 7.b-c indicated previously unrecognized levels of mixing of populations outside of the spawning season. The genetic markers and assignment models presented constitute a 'toolbox' that can be used for the assignment of herring caught in mixed survey and commercial catches in Division 6.a into their population of origin with a high level of accuracy.

Indexed as

fisheriesgenetic assignmentmanagementNorthwest herringstock identificationWest of Scotland herring

Identifiers

PMID36133150
PMCPMC9449477

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.