Evidence map›Paper›PMID 36131545›Full record

ArticleBiophysical journal2022

Convergent views on disordered protein dynamics from NMR and computational approaches.

Nicola Salvi, Vojtěch Zapletal, Zuzana Jaseňáková, Milan Zachrdla, Petr Padrta, Subhash Narasimhan, Thorsten Marquardsen, Jean-Max Tyburn, Lukáš Žídek, Martin Blackledge and 2 more

Abstract read
In one paragraph

Article in Biophysical journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Nicola SalviInstitut de Biologie Structurale (IBS), CEA, CNRS, University Grenoble Alpes, Grenoble, France.
Vojtěch ZapletalNational Centre for Biomolecular Research, Faculty of Science and Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Zuzana JaseňákováNational Centre for Biomolecular Research, Faculty of Science and Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Milan ZachrdlaLaboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, Paris, France.
Petr PadrtaCentral European Institute of Technology, Masaryk University, Brno, Czech Republic.
Subhash NarasimhanNational Centre for Biomolecular Research, Faculty of Science and Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Thorsten MarquardsenBruker BioSpin GmbH, Rheinstetten, Germany.
Jean-Max TyburnBioSpin, Wissembourg Cedex, France.
Lukáš ŽídekNational Centre for Biomolecular Research, Faculty of Science and Central European Institute of Technology, Masaryk University, Brno, Czech Republic.
Martin BlackledgeInstitut de Biologie Structurale (IBS), CEA, CNRS, University Grenoble Alpes, Grenoble, France. Electronic address: martin.blackledge@ibs.fr.
Fabien FerrageLaboratoire des Biomolécules, LBM, Département de chimie, École normale supérieure, PSL University, Sorbonne Université, CNRS, Paris, France. Electronic address: fabien.ferrage@ens.psl.eu.
Pavel KadeřávekCentral European Institute of Technology, Masaryk University, Brno, Czech Republic. Electronic address: pavel.kaderavek@mail.muni.cz.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intrinsically disordered proteins (IDPs) or intrinsically disordered regions (IDRs) is a class of biologically important proteins exhibiting specific biophysical characteristics. They lack a hydrophobic core, and their conformational behavior is strongly influenced by electrostatic interactions. IDPs and IDRs are highly dynamic, and a characterization of the motions of IDPs and IDRs is essential for their physically correct description. NMR together with molecular dynamics simulations are the methods best suited to such a task because they provide information about dynamics of proteins with atomistic resolution. Here, we present a study of motions of a disordered C-terminal domain of the delta subunit of RNA polymerase from Bacillus subtilis. Positively and negatively charged residues in the studied domain form transient electrostatic contacts critical for the biological function. Our study is focused on investigation of ps-ns dynamics of backbone of the delta subunit based on analysis of amide

Indexed as

Intrinsically Disordered ProteinsAmidesDNA-Directed RNA PolymerasesMagnetic Resonance SpectroscopyMolecular Dynamics SimulationProtein ConformationAmidesDNA-Directed RNA PolymerasesIntrinsically Disordered Proteins

Identifiers

PMID36131545
PMCPMC9674986

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.