Evidence map›Paper›PMID 36131208›Full record

ArticleNature metabolism2022

Metabolic collateral lethal target identification reveals MTHFD2 paralogue dependency in ovarian cancer.

Abhinav Achreja, Tao Yu, Anjali Mittal, Srinadh Choppara, Olamide Animasahun, Minal Nenwani, Fulei Wuchu, Noah Meurs, Aradhana Mohan, Jin Heon Jeon and 15 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature metabolism, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Tracing the Diverse Paths of One-Carbon Metabolism in Cancer and Beyond.Cold Spring Harbor perspectives in medicine · 2024
    Review
  17. Article
  18. Review
  19. Article
  20. Complex II ambiguities-FADHThe Journal of biological chemistry · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 4 institutions in 1 country.

Abhinav Achreja *Laboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-1773-6490
Tao Yu *Department of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA.ORCID 0000-0002-1903-7589
Anjali MittalLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-5670-032X
Srinadh ChopparaLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Olamide AnimasahunLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-4032-3619
Minal NenwaniLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Fulei WuchuLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Noah MeursLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Aradhana MohanLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Jin Heon JeonLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-8427-8514
Itisam SarangiLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Anusha JayaramanLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Sarah OwenBiointerfaces Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-4102-7707
Reva KulkarniLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA.
Michele CusatoRogel Cancer Center, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0003-0314-0634
Frank WeinbergHematology and Oncology, University of Illinois, Chicago, IL, USA.
Hye Kyong KweonDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA.
Chitra SubramanianBiointerfaces Institute, University of Michigan, Ann Arbor, MI, USA.
Max S WichaRogel Cancer Center, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0003-4180-7727
Sofia D MerajverRogel Cancer Center, University of Michigan, Ann Arbor, MI, USA.
Sunitha NagrathBiointerfaces Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-1497-7977
Kathleen R ChoRogel Cancer Center, University of Michigan, Ann Arbor, MI, USA.
Analisa DiFeoRogel Cancer Center, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-8319-6763
Xiongbin LuDepartment of Medical and Molecular Genetics, Indiana University School of Medicine, Indianapolis, IN, USA. xiolu@iu.edu.ORCID 0000-0002-7987-9825
Deepak NagrathLaboratory for Systems Biology of Human Diseases, University of Michigan, Ann Arbor, MI, USA. dnagrath@umich.edu.ORCID 0000-0002-8999-2282
University of Michigan · USIndiana University Health · USIndiana University School of MedicineUniversity of Illinois Chicago · US

Funding

Targeting Stromal Influences on BCKA Addiction in PDAC TumorsR01CA271369 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI THEODORE S LAWRENCE, Deepak Nagrath · 2022 to 2026
$2.8M
Targeting Stromal Influences on Glutamine Addiction in Ovarian CancerR01CA227622 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MOK, SAMUEL C, NAGRATH, DEEPAK · 2018 to 2022
$2.3M
Identification of USP13 as a therapeutic target for ovarian cancerR01CA222251 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI LU, XIONGBIN, NAGRATH, DEEPAK · 2018 to 2022
$1.8M
Uncovering Role of Exosomes in Regulating Pancreatic Cancer Cell MetabolismR01CA204969 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NAGRATH, DEEPAK · 2017 to 2021
$1.7M
Orbitrap Fusion Lumos ETD with IRMPD for UM Chemistry MS Facility ExpansionS10OD021619 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAKANSSON, KRISTINA · 2016 to 2016
$1.1M
NCI NIH HHS R01 CA204969NCI NIH HHS R01 CA222251NCI NIH HHS R01 CA227622NCI NIH HHS R01 CA271369NIH HHS S10 OD021619
6 · The paper itself

Abstract

Recurrent loss-of-function deletions cause frequent inactivation of tumour suppressor genes but often also involve the collateral deletion of essential genes in chromosomal proximity, engendering dependence on paralogues that maintain similar function. Although these paralogues are attractive anticancer targets, no methodology exists to uncover such collateral lethal genes. Here we report a framework for collateral lethal gene identification via metabolic fluxes, CLIM, and use it to reveal MTHFD2 as a collateral lethal gene in UQCR11-deleted ovarian tumours. We show that MTHFD2 has a non-canonical oxidative function to provide mitochondrial NAD

Indexed as

AminohydrolasesMethylenetetrahydrofolate Dehydrogenase (NADP)Multifunctional EnzymesOvarian NeoplasmsFemaleHumansHydrolasesMetabolic Networks and PathwaysMitochondriaNADAminohydrolasesHydrolasesMethylenetetrahydrofolate Dehydrogenase (NADP)MTHFD2 protein, humanMultifunctional EnzymesNAD

Identifiers

PMID36131208
OpenAlexW4296552191

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.