Evidence map›Paper›PMID 36131075›Full record

ArticleScientific reports2022

The natural history and genetic diversity of Haemophilus influenzae infecting the airways of adults with cystic fibrosis.

Conrad Izydorczyk, Barbara J Waddell, Robert B Weyant, Michael G Surette, Ranjani Somayaji, Harvey R Rabin, John M Conly, Deirdre L Church, Michael D Parkins

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Changing profile of bacterial infection and microbiome in cystic fibrosis: when to use antibiotics in the era of CFTR-modulator therapy.European respiratory review : an official journal of the European Respiratory Society · 2024
    Review
  4. Can microbiologists and infectious diseases physicians contribute to the management of bronchiectasis? A view from Down Under.Journal of the Association of Medical Microbiology and Infectious Disease Canada = Journal officiel de l'Association pour la microbiologie medicale et l'infectiologie Canada · 2023
    Article
  5. Frontiers in microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Conrad IzydorczykDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
Barbara J WaddellDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
Robert B WeyantDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
Michael G SuretteDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
Ranjani SomayajiDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
Harvey R RabinDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
John M ConlyDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
Deirdre L ChurchDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada.
Michael D ParkinsDepartment of Microbiology, Immunology and Infectious Diseases, Cumming School of Medicine, Calgary Adult Cystic Fibrosis Clinic, University of Calgary, Calgary, AB, Canada. mdparkin@ucalgary.ca.
University of Calgary · CAAlberta Health Services · CACalgary Laboratory Services · CAUniversity of Alberta · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Haemophilus influenzae is a Gram-negative pathobiont, frequently recovered from the airways of persons with cystic fibrosis (pwCF). Previous studies of H. influenzae infection dynamics and transmission in CF predominantly used molecular methods, lacking resolution. In this retrospective cohort study, representative yearly H. influenzae isolates from all pwCF attending the Calgary Adult CF Clinic with H. influenzae positive sputum cultures between 2002 and 2016 were typed by pulsed-field gel electrophoresis. Isolates with shared pulsotypes common to ≥ 2 pwCF were sequenced by Illumina MiSeq. Phylogenetic and pangenomic analyses were used to assess genetic relatedness within shared pulsotypes, and epidemiological investigations were performed to assess potential for healthcare associated transmission. H. influenzae infection was observed to be common (33% of patients followed) and dynamic in pwCF. Most infected pwCF exhibited serial infections with new pulsotypes (75% of pwCF with ≥ 2 positive cultures), with up to four distinct pulsotypes identified from individual patients. Prolonged infection by a single pulsotype was only rarely observed. Intra-patient genetic diversity was observed at the single-nucleotide polymorphism and gene content levels. Seven shared pulsotypes encompassing 39% of pwCF with H. influenzae infection were identified, but there was no evidence, within our sampling scheme, of direct patient-to-patient infection transmission.

Indexed as

Cystic FibrosisHaemophilus InfectionsAdultGenetic VariationHaemophilus influenzaeHumansPhylogenyRetrospective Studies

Identifiers

PMID36131075
PMCPMC9492733
OpenAlexW4296700173

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.