Evidence map›Paper›PMID 36130228›Full record

ArticleNucleic acids research2022

A mitochondria-specific mutational signature of aging: increased rate of A > G substitutions on the heavy strand.

Alina G Mikhailova, Alina A Mikhailova, Kristina Ushakova, Evgeny O Tretiakov, Dmitrii Iliushchenko, Victor Shamansky, Valeria Lobanova, Ivan Kozenkov, Bogdan Efimenko, Andrey A Yurchenko and 20 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 11 institutions in 7 countries.

Alina G MikhailovaCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.ORCID 0000-0002-5494-3536
Alina A MikhailovaCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Kristina UshakovaCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Evgeny O TretiakovCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.ORCID 0000-0001-5920-2190
Dmitrii IliushchenkoCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Victor ShamanskyCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.ORCID 0000-0001-7722-2232
Valeria LobanovaCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Ivan KozenkovCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Bogdan EfimenkoCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Andrey A YurchenkoINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.
Elena KozenkovaInstitute of Physics, Mathematics and Information Technology, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Evgeny M ZdobnovDepartment of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland.ORCID 0000-0002-5178-1498
Vsevolod MakeevVavilov Institute of General Genetics RAS, Moscow, Russia.ORCID 0000-0001-9405-9748
Valerian YurovInstitute of Physics, Mathematics and Information Technology, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Masashi TanakaDepartment of Neurology, Juntendo University Graduate School of Medicine, Tokyo, Japan.
Irina GostimskayaManchester Institute of Biotechnology, The University of Manchester, Manchester, United Kingdom.
Zoe FleischmannDepartment of Biology, Northeastern University, Boston, MA, USA.
Sofia AnnisDepartment of Biology, Northeastern University, Boston, MA, USA.
Melissa FrancoDepartment of Biology, Northeastern University, Boston, MA, USA.
Kevin WaskoDepartment of Biology, Northeastern University, Boston, MA, USA.
Stepan DenisovCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Wolfram S KunzDepartment of Epileptology and Institute of Experimental Epileptology and Cognition Research, University Bonn, Bonn, Germany.
Dmitry KnorreThe A.N. Belozersky Institute Of Physico-Chemical Biology, Moscow State University, Moscow, Russian Federation.
Ilya MazuninCenter for Molecular and Cellular Biology, Skolkovo Institute of Science and Technology (Skoltech), Skolkovo, Russian Federation.ORCID 0000-0002-5448-9679
Sergey NikolaevINSERM U981, Gustave Roussy Cancer Campus, Université Paris Saclay, Villejuif, France.
Jacques FellaySwiss Institute of Bioinformatics, Lausanne, Switzerland.
Alexandre ReymondCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.ORCID 0000-0003-1030-8327
Konstantin KhrapkoDepartment of Biology, Northeastern University, Boston, MA, USA.ORCID 0000-0002-9250-8033
Konstantin GunbinCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.
Konstantin PopadinCenter for Mitochondrial Functional Genomics, Immanuel Kant Baltic Federal University, Kaliningrad, Russian Federation.ORCID 0000-0002-2117-6086
Immanuel Kant Baltic Federal University · RUNortheastern University · USInserm · FRSIB Swiss Institute of Bioinformatics · CHJuntendo University · JPLomonosov Moscow State University · RUMoscow Institute of Physics and Technology · RUSkolkovo Institute of Science and Technology · RUUniversity of Geneva · CHUniversity of Lausanne · CHUniversity of Manchester · GB

Funding

mtDNA phylogeny of the germ line: mechanism, structure and function of the mtDNA bottleneckR01HD091439 · NICHD · NORTHEASTERN UNIVERSITY · PI KHRAPKO, KONSTANTIN, TILLY, JONATHAN LEE · 2018 to 2022
$1.6M
Austrian Science Fund FWF DOC 33NICHD NIH HHS R01 HD091439
6 · The paper itself

Abstract

The mutational spectrum of the mitochondrial DNA (mtDNA) does not resemble any of the known mutational signatures of the nuclear genome and variation in mtDNA mutational spectra between different organisms is still incomprehensible. Since mitochondria are responsible for aerobic respiration, it is expected that mtDNA mutational spectrum is affected by oxidative damage. Assuming that oxidative damage increases with age, we analyse mtDNA mutagenesis of different species in regards to their generation length. Analysing, (i) dozens of thousands of somatic mtDNA mutations in samples of different ages (ii) 70053 polymorphic synonymous mtDNA substitutions reconstructed in 424 mammalian species with different generation lengths and (iii) synonymous nucleotide content of 650 complete mitochondrial genomes of mammalian species we observed that the frequency of AH > GH substitutions (H: heavy strand notation) is twice bigger in species with high versus low generation length making their mtDNA more AH poor and GH rich. Considering that AH > GH substitutions are also sensitive to the time spent single-stranded (TSSS) during asynchronous mtDNA replication we demonstrated that AH > GH substitution rate is a function of both species-specific generation length and position-specific TSSS. We propose that AH > GH is a mitochondria-specific signature of oxidative damage associated with both aging and TSSS.

Indexed as

AgingDNA, MitochondrialMammalsAnimalsMitochondriaMutationNucleotidesDNA, MitochondrialNucleotides

Identifiers

PMID36130228
PMCPMC9561281
OpenAlexW4296933548

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.