Evidence map›Paper›PMID 36128501›Full record

ArticleRSC chemical biology2022

Cereblon covalent modulation through structure-based design of histidine targeting chemical probes.

Justin T Cruite, Geoffrey P Dann, Jianwei Che, Katherine A Donovan, Silas Ferrao, Scott B Ficarro, Eric S Fischer, Nathanael S Gray, Fidel Huerta, Nikki R Kong and 6 more

Abstract read
In one paragraph

Article in RSC chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Evolving CRBN ligands enhance the drug-like properties of protein degraders.Journal of enzyme inhibition and medicinal chemistry · 2026
    Review
  2. Article
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  15. Covalent Proximity Inducers.Chemical reviews · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Justin T CruiteCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Geoffrey P DannCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Jianwei CheCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Katherine A DonovanDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School Boston MA USA.
Silas FerraoCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Scott B FicarroDepartment of Cancer Biology, Department of Oncologic Pathology, and Blais Proteomics Center, Dana-Farber Cancer Institute Boston MA USA.
Eric S FischerCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.ORCID https://orcid.org/0000-0001-7337-6306
Nathanael S GrayDepartment of Chemical and Systems Biology, ChEM-H, Stanford Cancer Institute, School of Medicine, Stanford University Stanford CA USA.
Fidel HuertaCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Nikki R KongCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Hu LiuCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Jarrod A MartoDepartment of Cancer Biology, Department of Oncologic Pathology, and Blais Proteomics Center, Dana-Farber Cancer Institute Boston MA USA.
Rebecca J MetivierDepartment of Cancer Biology, Dana-Farber Cancer Institute Boston MA USA.
Radosław P NowakCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.ORCID https://orcid.org/0000-0002-0605-0071
Breanna L ZerfasCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.
Lyn H JonesCenter for Protein Degradation, Dana-Farber Cancer Institute Boston MA USA lyn_jones@dfci.harvard.edu.ORCID https://orcid.org/0000-0002-8388-5865

Funding

Novel Screening Platform for Discovery of DUB Targeting ProbesR01CA233800 · NCI · DANA-FARBER CANCER INST · PI BUHRLAGE, SARA J, MARTO, JARROD A. · 2019 to 2022
$2.5M
Tools for DUB Drug DiscoveryR21CA247671 · NCI · DANA-FARBER CANCER INST · PI BUHRLAGE, SARA J, MARTO, JARROD A. · 2020 to 2021
$648k
NCI NIH HHS R01 CA233800NCI NIH HHS R21 CA247671
6 · The paper itself

Abstract

Electrophilic biocompatible warheads, particularly cysteine-reactive acrylamides, have enabled the development of covalent inhibitor drugs and chemical biology probes, but cysteine is rarely present in protein binding sites. Therefore, expansion of the list of targetable amino acid residues is required to augment the synthetic bology toolkit of site-selective protein modifications. This work describes the first rational targeting of a specific histidine residue in a protein binding site using sulfonyl exchange chemistry. Structure-based drug design was used to incorporate sulfonyl fluoride and triazole reactive groups into the isoindolinone thalidomide congener EM12 to yield potent covalent inhibitors of the cereblon E3 ubiquitin ligase complex through engagement of His353. Conversely, the fluorosulfate derivative EM12-FS labels His353, but degrades a novel neosubstrate, the protein N-terminal glutamine amidohydrolase NTAQ1, which is involved in the N-end rule pathway and DNA damage response. Targeted protein degradation using cereblon ligands has become an important new drug discovery modality and the chemical probes and covalent labeling strategy described here will broadly impact this exciting area of therapeutic research.

Identifiers

PMID36128501
PMCPMC9428674

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.