Evidence map›Paper›PMID 36127468›Full record

ArticleNature structural & molecular biology2022

Compartmentalization of the replication fork by single-stranded DNA-binding protein regulates translesion synthesis.

Seungwoo Chang, Elizabeth S Thrall, Luisa Laureti, Sadie C Piatt, Vincent Pagès, Joseph J Loparo

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. A NovelbioRxiv : the preprint server for biology · 2026
    Article
  4. "ThebioRxiv : the preprint server for biology · 2026
    Article
  5. Review
  6. Genome integrity relies on rapid recycling of DNA Pol III in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. The RecBC complex protects single-stranded DNA gaps during lesion bypass.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. A bipartite interaction with the processivity clamp potentiates Pol IV-mediated TLS.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Replication stalling activates SSB for recruitment of DNA damage tolerance factors.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Focus and persistence: how Pol IV unblocks stalled DNA synthesis.Nature structural & molecular biology · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Seungwoo ChangDepartment of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.
Elizabeth S ThrallDepartment of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7670-3939
Luisa LauretiCRCM (Cancer Research Center of Marseille): Team DNA Damage and Genome Instability, Aix-Marseille University, CNRS, INSERM, Institut Paoli-Calmettes, Marseille, France.
Sadie C PiattDepartment of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-3296-3990
Vincent PagèsCRCM (Cancer Research Center of Marseille): Team DNA Damage and Genome Instability, Aix-Marseille University, CNRS, INSERM, Institut Paoli-Calmettes, Marseille, France.ORCID http://orcid.org/0000-0002-3059-2903
Joseph J LoparoDepartment of Biological Chemistry and Molecular Pharmacology, Blavatnik Institute, Harvard Medical School, Boston, MA, USA. joseph_loparo@hms.harvard.edu.ORCID http://orcid.org/0000-0003-4941-4696
Harvard University · USCentre National de la Recherche Scientifique · FR

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
Regulation of translesion synthesis by the bacterial replisomeR01GM114065 · NIGMS · HARVARD MEDICAL SCHOOL · PI LOPARO, JOSEPH J. · 2015 to 2024
$3.0M
Visualizing the Bacterial Replisome at Single-Molecule ResolutionF32GM113516 · NIGMS · HARVARD MEDICAL SCHOOL · PI THRALL, ELIZABETH SIMMONS · 2015 to 2016
$116k
NIGMS NIH HHS F32 GM113516NIGMS NIH HHS R01 GM114065NIGMS NIH HHS T32 GM008313
6 · The paper itself

Abstract

Processivity clamps tether DNA polymerases to DNA, allowing their access to the primer-template junction. In addition to DNA replication, DNA polymerases also participate in various genome maintenance activities, including translesion synthesis (TLS). However, owing to the error-prone nature of TLS polymerases, their association with clamps must be tightly regulated. Here we show that fork-associated ssDNA-binding protein (SSB) selectively enriches the bacterial TLS polymerase Pol IV at stalled replication forks. This enrichment enables Pol IV to associate with the processivity clamp and is required for TLS on both the leading and lagging strands. In contrast, clamp-interacting proteins (CLIPs) lacking SSB binding are spatially segregated from the replication fork, minimally interfering with Pol IV-mediated TLS. We propose that stalling-dependent structural changes within clusters of fork-associated SSB establish hierarchical access to the processivity clamp. This mechanism prioritizes a subset of CLIPs with SSB-binding activity and facilitates their exchange at the replication fork.

Indexed as

DNA-Binding ProteinsEscherichia coliDNADNA-Directed DNA PolymeraseDNA ReplicationDNADNA-Binding ProteinsDNA-Directed DNA Polymerase

Identifiers

PMID36127468
PMCPMC9509481
OpenAlexW4297249507

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.