Evidence map›Paper›PMID 36125768›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

BrdU Incorporation and Labeling of Nascent DNA to Investigate Archaeal Replication Using Super-Resolution Imaging.

Roxane Lestini, Yoann Collien, Debora Olivier, Nicolas Olivier, Hannu Myllykallio

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Roxane LestiniLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645-INSERM U1182, IP Paris, Palaiseau, Cedex, France. roxane.lestini@polytechnique.edu.
Yoann CollienLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645-INSERM U1182, IP Paris, Palaiseau, Cedex, France.
Debora OlivierLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645-INSERM U1182, IP Paris, Palaiseau, Cedex, France.
Nicolas OlivierLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645-INSERM U1182, IP Paris, Palaiseau, Cedex, France.
Hannu MyllykallioLaboratoire d'Optique et Biosciences, Ecole Polytechnique, CNRS UMR7645-INSERM U1182, IP Paris, Palaiseau, Cedex, France.
École Polytechnique · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The labeling and specific detection of nascent DNA by the incorporation of thymidine analogs provide crucial information about DNA replication dynamics without requiring the intracellular expression of fluorescent proteins. After cell fixation and permeabilization, specific detection of thymidine analogs by antibodies can be performed using super-resolution imaging techniques. Here we describe a protocol to label nascent DNA using 5'-bromo-2'-deoxyuridine (BrdU) in Haloferax volcanii cells and generate super-resolved images of neo-synthesized DNA foci either by 3D Structured illumination microscopy (3D-SIM) or Stochastic Optical Reconstruction Microscopy (STORM).

Indexed as

Haloferax volcaniiMicroscopyBromodeoxyuridineDNAThymidineBromodeoxyuridineDNAThymidine3D structured illuminated microscopy (3D-SIM)ArchaeaBrdUHaloferax volcaniiNascent DNA labelingReplicationStochastic optical reconstruction microscopy (STORM)Super-resolution imaging

Identifiers

PMID36125768
OpenAlexW4296501568

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.