Evidence map›Paper›PMID 36125275›Full record

ArticlemBio2022

SARS-CoV-2 Diverges from Other Betacoronaviruses in Only Partially Activating the IRE1α/XBP1 Endoplasmic Reticulum Stress Pathway in Human Lung-Derived Cells.

Long C Nguyen, David M Renner, Diane Silva, Dongbo Yang, Nicholas A Parenti, Kaeri M Medina, Vlad Nicolaescu, Haley Gula, Nir Drayman, Andrea Valdespino and 15 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. RNase L Regulates Antiviral Responsiveness through Cleavage of XBP1 mRNA.bioRxiv : the preprint server for biology · 2026
    Article
  4. Dual-function cytokines as modulators of autophagy: reprogramming inflammatory resolution in severe COVID-19.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Human coronaviruses: activation and antagonism of innate immune responses.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  10. Article
  11. Review
  12. Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Non-canonical activation of IRE1α duringbioRxiv : the preprint server for biology · 2024
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 3 institutions in 1 country.

Long C Nguyen *Ben May Department for Cancer Research, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
David M Renner *Department of Microbiology, University of Pennsylvaniagrid.25879.31, Philadelphia, Pennsylvania, USA.
Diane Silva *Department of Pathology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Dongbo YangBen May Department for Cancer Research, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Nicholas A ParentiDepartment of Microbiology, University of Pennsylvaniagrid.25879.31, Philadelphia, Pennsylvania, USA.
Kaeri M MedinaDepartment of Microbiology, University of Pennsylvaniagrid.25879.31, Philadelphia, Pennsylvania, USA.
Vlad NicolaescuDepartment of Microbiology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Haley GulaDepartment of Microbiology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Nir DraymanPritzker School of Molecular Engineering, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Andrea ValdespinoBen May Department for Cancer Research, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Adil MohamedPritzker School of Molecular Engineering, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Christopher DannBen May Department for Cancer Research, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Kristin WannemoDepartment of Pathology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Lydia Robinson-MailmanBen May Department for Cancer Research, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Alan GonzalezDepartment of Pathology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Letícia StockBen May Department for Cancer Research, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Mengrui CaoDepartment of Pathology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Zeyu QiaoDepartment of Chemistry, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Raymond E MoelleringDepartment of Chemistry, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Savas TayPritzker School of Molecular Engineering, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Glenn RandallDepartment of Microbiology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Michael F BeersDepartment of Medicine, University of Pennsylvaniagrid.25879.31, Philadelphia, Pennsylvania, USA.
Marsha Rich RosnerBen May Department for Cancer Research, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Scott A OakesDepartment of Pathology, University of Chicagogrid.170205.1, Chicago, Illinois, USA.
Susan R WeissDepartment of Microbiology, University of Pennsylvaniagrid.25879.31, Philadelphia, Pennsylvania, USA.ORCID 0000-0002-8155-4528
University of Chicago · USUniversity of Pennsylvania · USArgonne National Laboratory · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI MARK W. LINGEN · 1985 to 2026
$122.1M
The Integrated Stress Response in Human Islets During Early T1DU01DK127786 · NIDDK · UNIVERSITY OF CHICAGO · PI EVANS-MOLINA, CARMELLA, MIRMIRA, RAGHAVENDRA G · 2020 to 2025
$7.1M
MERS coronavirus: antagonism of double-stranded RNA induced host response by accessory proteinsR01AI140442 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI Susan R Weiss · 2018 to 2026
$5.1M
Training in Emerging Infectious DiseasesT32AI055400 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI CHERRY, SARA, HENSLEY, SCOTT ERIC · 2003 to 2022
$4.4M
Role of the Unfolded Protein Response in Photoreceptor DegenerationR01EY027810 · NEI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOULD, DOUGLAS, OAKES, SCOTT A. · 2018 to 2022
$3.0M
Targeting the Unfolded Protein Response in PanNETsR01CA219815 · NCI · UNIVERSITY OF CHICAGO · PI OAKES, SCOTT A. · 2018 to 2022
$2.4M
Regulation of RKIP FunctionR01GM121735 · NIGMS · UNIVERSITY OF CHICAGO · PI ROSNER, MARSHA R · 2017 to 2020
$1.6M
COVID-19: Understanding The Role of Corona Virus InducedDisruption Of Alveolar Type 2 Cell Function And SurfactantHomeostasis In The Pathogenesis Of COVID-19 AcuteRespiratory Distress SyndromeI01BX005411 · VA · PHILADELPHIA VA MEDICAL CENTER · PI BEERS, MICHAEL FRANCIS · 2021 to 2023
–
BLRD VA I01 BX001176BLRD VA I01 BX005411NCI NIH HHS P30 CA014599NCI NIH HHS R01 CA219815NEI NIH HHS R01 EY027810NIAID NIH HHS R01 AI140442NIAID NIH HHS T32 AI055400NIDDK NIH HHS U01 DK127786NIGMS NIH HHS R01 GM121735
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has killed over 6 million individuals worldwide and continues to spread in countries where vaccines are not yet widely available or its citizens are hesitant to become vaccinated. Therefore, it is critical to unravel the molecular mechanisms that allow SARS-CoV-2 and other coronaviruses to infect and overtake the host machinery of human cells. Coronavirus replication triggers endoplasmic reticulum (ER) stress and activation of the unfolded protein response (UPR), a key host cell pathway widely believed to be essential for viral replication. We examined the master UPR sensor IRE1α kinase/RNase and its downstream transcription factor effector XBP1s, which is processed through an IRE1α-mediated mRNA splicing event, in human lung-derived cells infected with betacoronaviruses. We found that human respiratory coronavirus OC43 (HCoV-OC43), Middle East respiratory syndrome coronavirus (MERS-CoV), and murine coronavirus (MHV) all induce ER stress and strongly trigger the kinase and RNase activities of IRE1α as well as XBP1 splicing. In contrast, SARS-CoV-2 only partially activates IRE1α through autophosphorylation, but its RNase activity fails to splice XBP1. Moreover, while IRE1α was dispensable for replication in human cells for all coronaviruses tested, it was required for maximal expression of genes associated with several key cellular functions, including the interferon signaling pathway, during SARS-CoV-2 infection. Our data suggest that SARS-CoV-2 actively inhibits the RNase of autophosphorylated IRE1α, perhaps as a strategy to eliminate detection by the host immune system.

Indexed as

COVID-19Middle East Respiratory Syndrome CoronavirusAnimalsEndoplasmic Reticulum StressEndoribonucleasesHumansInositolInterferonsLungMiceProtein Serine-Threonine KinasesRibonucleasesRNA, MessengerSARS-CoV-2Transcription FactorsX-Box Binding Protein 1EndoribonucleasesInositolInterferonsProtein Serine-Threonine KinasesRibonucleasesRNA, MessengerTranscription FactorsX-Box Binding Protein 1XBP1 protein, humancoronavirusIRE1α pathwayMERS-CoVOC43SARS-CoV-2unfolded protein response

Identifiers

PMID36125275
PMCPMC9600248
OpenAlexW4296782458

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.