Evidence map›Paper›PMID 36125045›Full record

ArticleDisease models & mechanisms2022

Promoting validation and cross-phylogenetic integration in model organism research.

Keith C Cheng, Rebecca D Burdine, Mary E Dickinson, Stephen C Ekker, Alex Y Lin, K C Kent Lloyd, Cathleen M Lutz, Calum A MacRae, John H Morrison, David H O'Connor and 8 more

Abstract read
In one paragraph

Article in Disease models & mechanisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Evaluating the Validity of Model Organisms: A Review and a New Framework for Biologists.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Review
  3. Article
  4. Review
  5. Review
  6. Synergistic modelling of human disease.Disease models & mechanisms · 2024
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Sharing resources to advance translational research.Disease models & mechanisms · 2022
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Keith C ChengDepartment of Pathology, Penn State College of Medicine, Hershey, PA 17033, USA.ORCID 0000-0002-5350-5825
Rebecca D BurdineDepartment of Molecular Biology, Princeton University, Princeton, NJ 08540, USA.ORCID 0000-0001-6620-5015
Mary E DickinsonDepartment of Molecular Physiology and Biophysics, Baylor College of Medicine, Houston, TX 77007, USA.
Stephen C EkkerDepartment of Biochemistry and Molecular Biology, Mayo Clinic, Rochester, MN 55906, USA.
Alex Y LinDepartment of Pathology, Penn State College of Medicine, Hershey, PA 17033, USA.
K C Kent LloydMouse Biology Program, School of Medicinel, University of California Davis, Davis, CA 95618, USA.
Cathleen M LutzThe Jackson Laboratory, Genetic Resource Science, Bar Harbor, ME 04609, USA.
Calum A MacRaeDepartment of Medicine, Brigham and Women's Hospital and Harvard Medical School, 360 Longwood Avenue, Boston, MA 02215, USA.
John H MorrisonCalifornia National Primate Research Center, University of California Davis, Davis, CA 95616, USA.
David H O'ConnorDepartment of Pathology and Laboratory Medicine, University ofWisconsin-Madison, Madison, WI 53711, USA.
John H PostlethwaitInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA.
Crystal D RogersSchool of Veterinary Medicine, University of California Davis, Davis, CA 95616, USA.
Susan SanchezDepartment of Infectious Diseases, College of Veterinary Medicine, The University of Georgia, Athens, GA 30602, USA.
Julie H SimpsonDepartment of Molecular, Cell and Developmental Biology, University of California, Santa Barbara, CA 93117, USA.
William S TalbotDepartment of Developmental Biology, Stanford University, Stanford, CA 94305, USA.
Douglas C WallaceDepartment of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA.
Jill M WeimerPediatrics and Rare Diseases Group, Sanford Research, Sioux Falls, SD 57104, USA.
Hugo J BellenDepartment of Molecular and Human Genetics, Neurological Research Institute (TCH), Baylor College of Medicine, Houston, TX 77007, USA.ORCID 0000-0001-5992-5989

Funding

National Institute on Aging (NIA) ColonyP51OD011107 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Simon J. Atkinson · 2012 to 2026
$191.5M
UM1HG006348: Cas9 Genome Integrity Supplemental ProposalUM1HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI Jason D. Heaney, Chih-Wei Logan Hsu · 2016 to 2026
$47.5M
KOMP2-Phase3 Production and Phenotyping by the DTCC Consortium TCP Transfer to UC DavisUM1OD023221 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KC KENT LLOYD · 2016 to 2026
$45.7M
UCD Mutant Mouse Regional Resource CenterU42OD012210 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI KC KENT LLOYD · 2012 to 2026
$29.2M
Resource and Service SectionU54OD030165 · OD · BAYLOR COLLEGE OF MEDICINE · PI MATTHEW E ROTH · 2020 to 2026
$16.6M
Validating promising drug candidates in mammalian models of CN poisoningU54NS079201 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI PETERSON, RANDALL T, PETERSON, RAYMOND J · 2012 to 2016
$12.6M
Systematic Vertebrate Functional GenomicsR01GM063904 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI EKKER, STEPHEN CARL · 2001 to 2025
$10.7M
Zebrafish CoreU54NS093793 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2015 to 2022
$7.5M
Expansion and characterization of the Drosophila Toolkit to study SARS-CoV-2R24OD022005 · OD · BAYLOR COLLEGE OF MEDICINE · PI BELLEN, HUGO J · 2016 to 2023
$7.4M
Groundwork for a Synchrotron MicroCT Imaging Resource for Biology (SMIRB)R24OD018559 · OD · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI CHENG, KEITH CHI · 2015 to 2022
$6.4M
A Community Zebrafish Resource for Modeling GWAS BiologyR24OD017870 · OD · BRIGHAM AND WOMEN'S HOSPITAL · PI GOESSLING, WOLFRAM, MACRAE, CALUM A. · 2014 to 2021
$6.3M
Mouse Metabolic Phenotyping Center (MMPC) at UC DavisU2CDK092993 · NIDDK · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LLOYD, KC KENT · 2016 to 2021
$5.9M
Howard Hughes Medical InstituteNHGRI NIH HHS UM1 HG006348NIAMS NIH HHS R01 AR071486NIDDK NIH HHS U2C DK092993NIGMS NIH HHS R01 GM063904NIH HHS P51 OD011107NIH HHS R01 OD011116NIH HHS R03 OD030597NIH HHS R24 OD017870NIH HHS R24 OD018559NIH HHS R24 OD022005NIH HHS R24 OD026591NIH HHS R24 OD031447NIH HHS R24 OD035402NIH HHS R24 OD035407NIH HHS R24 OD036201NIH HHS U42 OD012210NIH HHS U42 OD026645NIH HHS U54 OD030165NIH HHS UM1 OD023221NINDS NIH HHS R01 NS110866NINDS NIH HHS R21 NS114618NINDS NIH HHS R35 NS111584NINDS NIH HHS U54 NS079201NINDS NIH HHS U54 NS093793
6 · The paper itself

Abstract

Model organism (MO) research provides a basic understanding of biology and disease due to the evolutionary conservation of the molecular and cellular language of life. MOs have been used to identify and understand the function of orthologous genes, proteins, cells and tissues involved in biological processes, to develop and evaluate techniques and methods, and to perform whole-organism-based chemical screens to test drug efficacy and toxicity. However, a growing richness of datasets and the rising power of computation raise an important question: How do we maximize the value of MOs? In-depth discussions in over 50 virtual presentations organized by the National Institutes of Health across more than 10 weeks yielded important suggestions for improving the rigor, validation, reproducibility and translatability of MO research. The effort clarified challenges and opportunities for developing and integrating tools and resources. Maintenance of critical existing infrastructure and the implementation of suggested improvements will play important roles in maintaining productivity and facilitating the validation of animal models of human biology and disease.

Indexed as

Biological EvolutionAnimalsHumansPhylogenyReproducibility of ResultsHuman diseasesIntegrationModel organismsOmicsPhenomicsResearch resourcesTechnologyValidation

Identifiers

PMID36125045
PMCPMC9531892

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.