Evidence map›Paper›PMID 36124989›Full record

ArticlePlant physiology2023

Lignocellulose molecular assembly and deconstruction properties of lignin-altered rice mutants.

Andri Fadillah Martin, Yuki Tobimatsu, Pui Ying Lam, Naoyuki Matsumoto, Takuto Tanaka, Shiro Suzuki, Ryosuke Kusumi, Takuji Miyamoto, Yuri Takeda-Kimura, Masaomi Yamamura and 5 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Solid-state NMR at natural isotopic abundance for bioenergy applications.Biotechnology for biofuels and bioproducts · 2025
    Review
  5. Article
  6. Metabolic engineering ofPlant biotechnology (Tokyo, Japan) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Andri Fadillah MartinResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0002-6723-3058
Yuki TobimatsuResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0002-7578-7392
Pui Ying LamResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0001-5025-1308
Naoyuki MatsumotoResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0002-1993-0836
Takuto TanakaResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.
Shiro SuzukiResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0002-6461-9844
Ryosuke KusumiGraduate School of Agriculture, Kyoto University, Kyoto, 606-8502, Japan.ORCID 0000-0002-5084-9489
Takuji MiyamotoResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0002-4458-1420
Yuri Takeda-KimuraResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0001-5833-8459
Masaomi YamamuraResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0002-1204-9229
Taichi KoshibaResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.
Keishi OsakabeFaculty of Bioscience and Bioindustry, Tokushima University, Tokushima, 770-8503, Japan.ORCID 0000-0002-6227-6913
Yuriko OsakabeSchool of Life Science and Technology, Tokyo Institute of Technology, Tokyo, 152-8550, Japan.ORCID 0000-0001-5503-1427
Masahiro SakamotoGraduate School of Agriculture, Kyoto University, Kyoto, 606-8502, Japan.ORCID 0000-0003-2965-3833
Toshiaki UmezawaResearch Institute for Sustainable Humanosphere, Kyoto University, Gokasho, Uji 611-0011, Japan.ORCID 0000-0003-1135-5387
Kyoto University · JPAkita University · JPNational Agriculture and Food Research Organization · JPTokushima University · JPTokyo Institute of Technology · JPUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bioengineering approaches to modify lignin content and structure in plant cell walls have shown promise for facilitating biochemical conversions of lignocellulosic biomass into valuable chemicals. Despite numerous research efforts, however, the effect of altered lignin chemistry on the supramolecular assembly of lignocellulose and consequently its deconstruction in lignin-modified transgenic and mutant plants is not fully understood. In this study, we aimed to close this gap by analyzing lignin-modified rice (Oryza sativa L.) mutants deficient in 5-HYDROXYCONIFERALDEHYDE O-METHYLTRANSFERASE (CAldOMT) and CINNAMYL ALCOHOL DEHYDROGENASE (CAD). A set of rice mutants harboring knockout mutations in either or both OsCAldOMT1 and OsCAD2 was generated in part by genome editing and subjected to comparative cell wall chemical and supramolecular structure analyses. In line with the proposed functions of CAldOMT and CAD in grass lignin biosynthesis, OsCAldOMT1-deficient mutant lines produced altered lignins depleted of syringyl and tricin units and incorporating noncanonical 5-hydroxyguaiacyl units, whereas OsCAD2-deficient mutant lines produced lignins incorporating noncanonical hydroxycinnamaldehyde-derived units. All tested OsCAldOMT1- and OsCAD2-deficient mutants, especially OsCAldOMT1-deficient lines, displayed enhanced cell wall saccharification efficiency. Solid-state nuclear magnetic resonance (NMR) and X-ray diffraction analyses of rice cell walls revealed that both OsCAldOMT1- and OsCAD2 deficiencies contributed to the disruptions of the cellulose crystalline network. Further, OsCAldOMT1 deficiency contributed to the increase of the cellulose molecular mobility more prominently than OsCAD2 deficiency, resulting in apparently more loosened lignocellulose molecular assembly. Such alterations in cell wall chemical and supramolecular structures may in part account for the variations of saccharification performance of the OsCAldOMT1- and OsCAD2-deficient rice mutants.

Indexed as

LigninOryzaCell WallMutationPlant ProteinsLigninlignocellulosePlant Proteins

Identifiers

PMID36124989
PMCPMC9806629
OpenAlexW4296780179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.