Evidence map›Paper›PMID 36124979›Full record

ArticlePlant physiology2022

INOSITOL (1,3,4) TRIPHOSPHATE 5/6 KINASE1-dependent inositol polyphosphates regulate auxin responses in Arabidopsis.

Nargis Parvin Laha, Ricardo F H Giehl, Esther Riemer, Danye Qiu, Naga Jyothi Pullagurla, Robin Schneider, Yashika Walia Dhir, Ranjana Yadav, Yeshambel Emewodih Mihiret, Philipp Gaugler and 9 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 4 countries.

Nargis Parvin LahaDepartment of Plant Nutrition, Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53115, Germany.ORCID 0000-0002-7744-1408
Ricardo F H GiehlDepartment of Physiology & Cell Biology, Leibniz-Institute of Plant Genetics and Crop Plant Research, Gatersleben 06466, Germany.ORCID 0000-0003-1006-3163
Esther RiemerDepartment of Plant Nutrition, Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53115, Germany.ORCID 0000-0001-8097-8997
Danye QiuDepartment of Chemistry and Pharmacy & CIBSS-The Center for Biological Signalling Studies, University of Freiburg, Freiburg 79104, Germany.ORCID 0000-0003-2197-3218
Naga Jyothi PullagurlaDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, Karnataka, India.ORCID 0000-0001-7285-6068
Robin SchneiderDepartment of Plant Nutrition, Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53115, Germany.ORCID 0000-0002-9657-4548
Yashika Walia DhirLaboratory of Signal Transduction and Plant Resistance, Regional Centre for Biotechnology, NCR-Biotech Science Cluster, Faridabad 121001, Haryana, India.ORCID 0000-0002-0796-0050
Ranjana YadavDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, Karnataka, India.ORCID 0000-0003-4956-5638
Yeshambel Emewodih MihiretDepartment of Plant Nutrition, Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53115, Germany.ORCID 0000-0002-2059-880X
Philipp GauglerDepartment of Plant Nutrition, Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53115, Germany.ORCID 0000-0002-9187-404X
Verena GauglerDepartment of Plant Nutrition, Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53115, Germany.ORCID 0000-0002-3249-2922
Haibin MaoDepartment of Pharmacology, Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA.
Ning ZhengDepartment of Pharmacology, Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA.ORCID 0000-0002-1039-1581
Nicolaus von WirénDepartment of Physiology & Cell Biology, Leibniz-Institute of Plant Genetics and Crop Plant Research, Gatersleben 06466, Germany.ORCID 0000-0002-4966-425X
Adolfo SaiardiMedical Research Council Laboratory for Molecular Cell Biology (MRC-LMCB), University College London, London WC1E 6BT, UK.ORCID 0000-0002-4351-0081
Saikat BhattacharjeeLaboratory of Signal Transduction and Plant Resistance, Regional Centre for Biotechnology, NCR-Biotech Science Cluster, Faridabad 121001, Haryana, India.ORCID 0000-0003-1369-7700
Henning J JessenDepartment of Chemistry and Pharmacy & CIBSS-The Center for Biological Signalling Studies, University of Freiburg, Freiburg 79104, Germany.ORCID 0000-0002-1025-9484
Debabrata LahaDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, Karnataka, India.
Gabriel SchaafDepartment of Plant Nutrition, Institute of Crop Science and Resource Conservation, Rheinische Friedrich-Wilhelms-Universität Bonn, Bonn 53115, Germany.ORCID 0000-0001-9022-4515
University of Bonn · DEIndian Institute of Science Bangalore · INHoward Hughes Medical Institute · USLeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DERegional Centre for Biotechnology · INUniversity of Freiburg · DEMRC Laboratory for Molecular Cell Biology · GB

Funding

Medical Research Council MR/T028904/1
6 · The paper itself

Abstract

The combinatorial phosphorylation of myo-inositol results in the generation of different inositol phosphates (InsPs), of which phytic acid (InsP6) is the most abundant species in eukaryotes. InsP6 is also an important precursor of the higher phosphorylated inositol pyrophosphates (PP-InsPs), such as InsP7 and InsP8, which are characterized by a diphosphate moiety and are also ubiquitously found in eukaryotic cells. While PP-InsPs regulate various cellular processes in animals and yeast, their biosynthesis and functions in plants has remained largely elusive because plant genomes do not encode canonical InsP6 kinases. Recent work has shown that Arabidopsis (Arabidopsis thaliana) INOSITOL (1,3,4) TRIPHOSPHATE 5/6 KINASE1 (ITPK1) and ITPK2 display in vitro InsP6 kinase activity and that, in planta, ITPK1 stimulates 5-InsP7 and InsP8 synthesis and regulates phosphate starvation responses. Here we report a critical role of ITPK1 in auxin-related processes that is independent of the ITPK1-controlled regulation of phosphate starvation responses. Those processes include primary root elongation, root hair development, leaf venation, thermomorphogenic and gravitropic responses, and sensitivity to exogenously applied auxin. We found that the recombinant auxin receptor complex, consisting of the F-Box protein TRANSPORT INHIBITOR RESPONSE1 (TIR1), ARABIDOPSIS SKP1 HOMOLOG 1 (ASK1), and the transcriptional repressor INDOLE-3-ACETIC ACID INDUCIBLE 7 (IAA7), binds to anionic inositol polyphosphates with high affinity. We further identified a physical interaction between ITPK1 and TIR1, suggesting a localized production of 5-InsP7, or another ITPK1-dependent InsP/PP-InsP isomer, to activate the auxin receptor complex. Finally, we demonstrate that ITPK1 and ITPK2 function redundantly to control auxin responses, as deduced from the auxin-insensitive phenotypes of itpk1 itpk2 double mutant plants. Our findings expand the mechanistic understanding of auxin perception and suggest that distinct inositol polyphosphates generated near auxin receptors help to fine-tune auxin sensitivity in plants.

Indexed as

ArabidopsisArabidopsis ProteinsPhosphotransferases (Alcohol Group Acceptor)Indoleacetic AcidsInositol PhosphatesPlantsPolyphosphatesArabidopsis ProteinsAT5G16760 protein, ArabidopsisIndoleacetic Acidsinositol heptakisphosphateInositol PhosphatesPhosphotransferases (Alcohol Group Acceptor)Polyphosphatestriphosphoric acid

Identifiers

PMID36124979
PMCPMC9706486
OpenAlexW4296483658

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.