Evidence map›Paper›PMID 36124617›Full record

ArticleMolecular genetics & genomic medicine2022

High-level gonosomal mosaicism for a pathogenic non-coding CNV deletion of the lung-specific FOXF1 enhancer in an unaffected mother of an infant with ACDMPV.

Esra Yıldız Bölükbaşı, Justyna A Karolak, Przemyslaw Szafranski, Tomasz Gambin, Nicholas Willard, Steven H Abman, Csaba Galambos, John P Kinsella, Paweł Stankiewicz

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Esra Yıldız BölükbaşıDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-3251-8133
Justyna A KarolakChair and Department of Genetics and Pharmaceutical Microbiology, Poznan University of Medical Sciences, Poznan, Poland.ORCID 0000-0002-2340-4513
Przemyslaw SzafranskiDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-3886-2971
Tomasz GambinInstitute of Computer Science, Warsaw University of Technology, Warsaw, Poland.ORCID 0000-0002-0941-4571
Nicholas WillardDepartment of Pathology and Laboratory Medicine, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.ORCID 0000-0003-4912-201X
Steven H AbmanDepartment of Pediatrics, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.ORCID 0000-0002-7292-2085
Csaba GalambosDepartment of Pathology and Laboratory Medicine, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.ORCID 0000-0002-8940-6650
John P KinsellaDepartment of Pediatrics, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.ORCID 0000-0003-4840-8761
Paweł StankiewiczDepartment of Molecular & Human Genetics, Baylor College of Medicine, Houston, Texas, USA.ORCID 0000-0002-6456-7490
University of Colorado Anschutz Medical Campus · USBaylor College of Medicine · USPoznan University of Medical Sciences · PLWarsaw University of Technology · PL

Funding

Unrecognized scale and clinical relevance of somatic mosaicismR01HD087292 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI STANKIEWICZ, PAWEL · 2017 to 2021
$2.5M
Epigenomic dysfunction at 16q24.1 vascular defects and perinatal consequencesR01HL137203 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI STANKIEWICZ, PAWEL · 2017 to 2020
$2.0M
NHLBI NIH HHS R01 HL137203NICHD NIH HHS R01 HD087292
6 · The paper itself

Abstract

backgroundAlveolar capillary dysplasia with misalignment of pulmonary veins (ACDMPV) results from haploinsufficiency of the mesenchymal transcription factor FOXF1 gene. To date, only one case of an ACDMPV-causative CNV deletion inherited from a very-low level somatic mosaic mother has been reported.

methodsClinical, histopathological, and molecular studies, including whole genome sequencing, chromosomal microarray analysis, qPCR, and Sanger sequencing, followed by in vitro fertilization (IVF) with preimplantation genetic testing (PGT) were used to study a family with a deceased neonate with ACDMPV.

resultsA pathogenic CNV deletion of the lung-specific FOXF1 enhancer in the proband was found to be inherited from an unaffected mother, 36% mosaic for this deletion in her peripheral blood cells. The qPCR analyses of saliva, buccal cells, urine, nail, and hair samples revealed 19%, 18%, 15%, 19%, and 27% variant allele fraction, respectively, indicating a high recurrence risk. Grandparental studies revealed that the deletion arose on the mother's paternal chromosome 16. PGT studies revealed 44% embryos with the deletion, reflecting high-level germline mosaicism.

conclusionOur data further demonstrate the importance of parental testing in ACDMPV families and reproductive usefulness of IVF with PGT in families with high-level parental gonosomal mosaicism.

Indexed as

Persistent Fetal Circulation SyndromeFemaleForkhead Transcription FactorsHumansInfantInfant, NewbornLungMosaicismMouth MucosaPulmonary AlveoliSequence DeletionForkhead Transcription FactorsFOXF1 protein, humangenetics of lung developmentgermline mosaicismparental mosaicismsomatic mosaicism

Identifiers

PMID36124617
PMCPMC9651602
OpenAlexW4297457174

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.