Evidence map›Paper›PMID 36124427›Full record

ArticleThe EMBO journal2022

Autophagy-linked plasma and lysosomal membrane protein PLAC8 is a key host factor for SARS-CoV-2 entry into human cells.

Alejandro P Ugalde, Gabriel Bretones, David Rodríguez, Víctor Quesada, Francisco Llorente, Raúl Fernández-Delgado, Miguel Ángel Jiménez-Clavero, Jesús Vázquez, Enrique Calvo, Isaac Tamargo-Gómez and 9 more

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 35 citations in OpenAlex.

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  16. SARS-CoV-2 biology and host interactions.Nature reviews. Microbiology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 1 country.

Alejandro P Ugalde *Departamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0003-2522-0627
Gabriel Bretones *Departamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0002-1521-5544
David RodríguezDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0002-7530-2770
Víctor QuesadaDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0002-8398-3457
Francisco LlorenteCentro de Investigación en Sanidad Animal (CISA-INIA), CSIC, Valdeolmos, Spain.
Raúl Fernández-DelgadoCentro de Investigación en Sanidad Animal (CISA-INIA), CSIC, Valdeolmos, Spain.ORCID 0000-0001-7411-9010
Miguel Ángel Jiménez-ClaveroCentro de Investigación en Sanidad Animal (CISA-INIA), CSIC, Valdeolmos, Spain.ORCID 0000-0003-2125-9743
Jesús VázquezCentro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.ORCID 0000-0003-1461-5092
Enrique CalvoCentro Nacional de Investigaciones Cardiovasculares (CNIC), Madrid, Spain.
Isaac Tamargo-GómezInstituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Spain.ORCID 0000-0002-9907-2543
Guillermo MariñoInstituto de Investigación Sanitaria del Principado de Asturias (ISPA), Oviedo, Spain.ORCID 0000-0003-1960-1677
David Roiz-ValleDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0001-9131-6155
Daniel MaesoDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0003-0086-6157
Miguel Araujo-VocesDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0003-3360-4479
Yaiza EspañolDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0002-4686-2509
Carles BarcelóTranslational Pancreatic Cancer Oncogenesis Group, Health Research Institute of the Balearic Islands (IdISBa), Palma de Mallorca, Spain.ORCID 0000-0003-2551-2136
José Mp FreijeDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0002-4688-8266
Alejandro López-SotoDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0002-6360-5205
Carlos López-OtínDepartamento de Bioquímica y Biología Molecular, Instituto Universitario de Oncología (IUOPA), Universidad de Oviedo, Oviedo, Spain.ORCID 0000-0001-6964-1904
Universidad de Oviedo · ESCentro Regional de Selección y Reproducción Animal · ESSpanish National Centre for Cardiovascular Research · ESHealth Research Institute of the Balearic Islands · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Better understanding on interactions between SARS-CoV-2 and host cells should help to identify host factors that may be targetable to combat infection and COVID-19 pathology. To this end, we have conducted a genome-wide CRISPR/Cas9-based loss-of-function screen in human lung cancer cells infected with SARS-CoV-2-pseudotyped lentiviruses. Our results recapitulate many findings from previous screens that used full SARS-CoV-2 viruses, but also unveil two novel critical host factors: the lysosomal efflux transporter SPNS1 and the plasma and lysosomal membrane protein PLAC8. Functional experiments with full SARS-CoV-2 viruses confirm that loss-of-function of these genes impairs viral entry. We find that PLAC8 is a key limiting host factor, whose overexpression boosts viral infection in eight different human lung cancer cell lines. Using single-cell RNA-Seq data analyses, we demonstrate that PLAC8 is highly expressed in ciliated and secretory cells of the respiratory tract, as well as in gut enterocytes, cell types that are highly susceptible to SARS-CoV-2 infection. Proteomics and cell biology studies suggest that PLAC8 and SPNS1 regulate the autophagolysosomal compartment and affect the intracellular fate of endocytosed virions.

Indexed as

COVID-19Lung NeoplasmsAngiotensin-Converting Enzyme 2AutophagyHumansLysosomal Membrane ProteinsProteinsSARS-CoV-2Angiotensin-Converting Enzyme 2Lysosomal Membrane ProteinsPLAC8 protein, humanProteinsautophagycovid19genetic screenplac8spns1

Identifiers

PMID36124427
PMCPMC9627672
OpenAlexW4296788170

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.