Evidence map›Paper›PMID 36123645›Full record

ArticleBMC genomics2022

Massive expansion of P-selectin genes in two Venerida species, Sinonovacula constricta and Mercenaria mercenaria: evidence from comparative genomics of Bivalvia.

Yuanfeng Xu, Xumeng Dong, Shuonan Ma, Cheng Luo, Jilin Xu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yuanfeng Xu *School of Marine Sciences, Ningbo University, Ningbo, 315020, China.
Xumeng Dong *School of Marine Sciences, Ningbo University, Ningbo, 315020, China.
Shuonan MaSchool of Marine Sciences, Ningbo University, Ningbo, 315020, China. mashuonan@nbu.edu.cn.
Cheng LuoSchool of Marine Sciences, Ningbo University, Ningbo, 315020, China.
Jilin XuSchool of Marine Sciences, Ningbo University, Ningbo, 315020, China. xujilin@nbu.edu.cn.
Ningbo University · CN

Funding

Basic Public Welfare Research Program of Zhejiang Province LQ21C030005National Key Research and Development Program of China 2019YFD0900400National Natural Science Foundation of China 42107399Ningbo Public Welfare Science and Technology Program 2021S060Ningbo Science and Technology Research Projects, China 2019B10006
6 · The paper itself

Abstract

backgroundP-selectin is a molecule participating in the inflammatory response through mediating cellular adhesion and essential for wound repair. However, studies regarding P-selectin in Bivalvia are rare. This study identified 90 P-selectin genes among nine bivalve genomes and classified them into 4 subfamilies according to phylogenetic analysis.

resultsNotable P-selectin gene expansion was observed in two Venerida species, Sinonovacula constricta and Mercenaria mercenaria. The synteny analysis revealed that P-selectin gene expansion was mostly caused by tandem duplication. In addition, the expression profiles of P-selectin genes in S. constricta showed that many P-selectins were specifically highly expressed in the gills, and the P-selectin expression patterns changed dramatically under low salt stress and ammonia nitrogen stress.

conclusionsThe massive expansion of P-selectins may facilitate the tolerance to environmental stresses. This study sheds light on the characterizations and expression profiles of P-selectin genes in Bivalvia and provides an integrated framework for further investigation of the role of P-selectins in the environmental tolerance of bivalves.

Indexed as

MercenariaAmmoniaAnimalsGenomicsPhylogenyP-SelectinAmmoniaP-SelectinBivalviaEnvironmental stressGene expansionP-selectinSinonovacula constricta

Identifiers

PMID36123645
PMCPMC9484242
OpenAlexW4296349120

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.