Evidence map›Paper›PMID 36123354›Full record

ArticleNature communications2022

A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production.

Naomi R Genuth, Zhen Shi, Koshi Kunimoto, Victoria Hung, Adele F Xu, Craig H Kerr, Gerald C Tiu, Juan A Oses-Prieto, Rachel E A Salomon-Shulman, Jeffrey D Axelrod and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 51 citations in OpenAlex.

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  13. The ribosomal landscape in influenza A virus infection: from molecular mechanisms to clinical relevance.European respiratory review : an official journal of the European Respiratory Society · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Naomi R GenuthDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-2240-1318
Zhen ShiDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.
Koshi KunimotoDepartment of Pathology, Stanford University, Stanford, CA, 94305, USA.
Victoria HungDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-3972-2820
Adele F XuDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0003-3332-5285
Craig H KerrDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.
Gerald C TiuDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA.
Juan A Oses-PrietoDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, 94158, USA.ORCID 0000-0003-4759-2341
Rachel E A Salomon-ShulmanDepartment of Developmental Biology, Stanford University, Stanford, CA, 94305, USA.
Jeffrey D AxelrodDepartment of Pathology, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0001-6094-7392
Alma L BurlingameDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA, 94158, USA.ORCID 0000-0002-8403-7307
Kyle M LohDepartment of Developmental Biology, Stanford University, Stanford, CA, 94305, USA.ORCID 0000-0002-8042-0149
Maria BarnaDepartment of Genetics, Stanford University, Stanford, CA, 94305, USA. mbarna@stanford.edu.ORCID 0000-0002-6843-4396
Stanford University · USUniversity of California, San Francisco · US

Funding

Supplement to Enhance Wellness and Resiliency in the Graduate EnvironmentT32GM007276 · NIGMS · STANFORD UNIVERSITY · PI MORRISON, ASHBY J. · 1985 to 2023
$32.9M
Planar cell polarity mechanisms and systems architectureR35GM131914 · NIGMS · STANFORD UNIVERSITY · PI Jeffrey D. Axelrod · 2019 to 2026
$7.4M
Specialized Translational Control of Stem Cell Differentiation and Embryonic DevelopmentR01HD086634 · NICHD · STANFORD UNIVERSITY · PI BARNA, MARIA · 2016 to 2025
$5.5M
Developing approaches for universal organ transplantationDP5OD024558 · OD · STANFORD UNIVERSITY · PI LOH, KYLE M · 2017 to 2021
$2.0M
CELL TYPE-SPECIFIC CONTROL of GENE EXPRESSION by RIBOSOMAL PROTEIN ISOFORMSF30HD100123 · NICHD · STANFORD UNIVERSITY · PI XU, ADELE FRANCIS · 2019 to 2023
$133k
NICHD NIH HHS F30 HD100123NICHD NIH HHS R01 HD086634NIGMS NIH HHS R35 GM131914NIGMS NIH HHS T32 GM007276NIH HHS DP5 OD024558
6 · The paper itself

Abstract

Recent findings suggest that the ribosome itself modulates gene expression. However, whether ribosomes change composition across cell types or control cell fate remains unknown. Here, employing quantitative mass spectrometry during human embryonic stem cell differentiation, we identify dozens of ribosome composition changes underlying cell fate specification. We observe upregulation of RPL10A/uL1-containing ribosomes in the primitive streak followed by progressive decreases during mesoderm differentiation. An Rpl10a loss-of-function allele in mice causes striking early mesodermal phenotypes, including posterior trunk truncations, and inhibits paraxial mesoderm production in culture. Ribosome profiling in Rpl10a loss-of-function mice reveals decreased translation of mesoderm regulators, including Wnt pathway mRNAs, which are also enriched on RPL10A/uL1-containing ribosomes. We further show that RPL10A/uL1 regulates canonical and non-canonical Wnt signaling during stem cell differentiation and in the developing embryo. These findings reveal unexpected ribosome composition modularity that controls differentiation and development through the specialized translation of key signaling networks.

Indexed as

MesodermStem CellsAnimalsCell DifferentiationHumansMiceRibosomal ProteinsRibosomesWnt Signaling PathwayRibosomal ProteinsRpl10a protein, rat

Identifiers

PMID36123354
PMCPMC9485161
OpenAlexW4296299322

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.