Evidence map›Paper›PMID 36123353›Full record

ArticleNature communications2022

Integrated stem cell signature and cytomolecular risk determination in pediatric acute myeloid leukemia.

Benjamin J Huang, Jenny L Smith, Jason E Farrar, Yi-Cheng Wang, Masayuki Umeda, Rhonda E Ries, Amanda R Leonti, Erin Crowgey, Scott N Furlan, Katherine Tarlock and 16 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Hematopoietic Stem Cell Transplantation Outcomes for High-Risk AML: A Report From the Children's Oncology Group.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2025
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  20. Metabolic dependencies of acute myeloid leukemia stem cells.International journal of hematology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Benjamin J HuangDepartment of Pediatrics, University of California San Francisco, San Francisco, CA, USA. ben.huang@ucsf.edu.ORCID 0000-0001-6996-0833
Jenny L SmithFred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0003-0402-2779
Jason E FarrarUniversity of Arkansas for Medical Sciences & Arkansas Children's Research Institute, Little Rock, AR, USA.ORCID 0000-0003-2148-5839
Yi-Cheng WangChildren's Oncology Group, Monrovia, CA, USA.
Masayuki UmedaDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Rhonda E RiesFred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID 0000-0002-3702-7923
Amanda R LeontiFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Erin CrowgeyNemours Center for Cancer and Blood Disorders and Alfred I. DuPont Hospital for Children, Wilmington, DE, USA.
Scott N FurlanFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Katherine TarlockFred Hutchinson Cancer Research Center, Seattle, WA, USA.
Marcos ArmendarizSchool of Medicine, University of California, San Francisco, San Francisco, CA, USA.
Yanling LiuDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Timothy I ShawDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Lisa WeiMichael Smith Genome Sciences Centre, Vancouver, BC, Canada.
Robert B GerbingChildren's Oncology Group, Monrovia, CA, USA.
Todd M CooperDivision of Hematology/Oncology, Seattle Children's Hospital, University of Washington, Seattle, WA, USA.
Alan S GamisChildren's Mercy Hospitals and Clinics, Kansas City, MO, USA.
Richard AplencChildren's Hospital of Philadelphia, Philadelphia, PA, USA.
E Anders KolbNemours Center for Cancer and Blood Disorders and Alfred I. DuPont Hospital for Children, Wilmington, DE, USA.
Jeffrey RubnitzDepartment of Oncology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0001-9885-3527
Jing MaDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.
Jeffery M KlcoDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0003-2961-6960
Xiaotu MaDepartment of Computational Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.ORCID 0000-0002-6233-2145
Todd A AlonzoDepartment of Preventive Medicine, University of Southern California, Los Angeles, CA, USA.
Timothy TricheVan Andel Research Institute, Grand Rapids, MI, USA.
Soheil MeshinchiFred Hutchinson Cancer Research Center, Seattle, WA, USA.

Funding

NCTN BIQSFP ANBL1531 (NRT)U10CA180886 · NCI · PUBLIC HEALTH INSTITUTE · PI Douglas S. Hawkins · 2014 to 2026
$390.6M
COG FOREIGN ACCRUALU10CA098543 · NCI · NATIONAL CHILDHOOD CANCER FOUNDATION · PI ADAMSON, PETER C. · 2003 to 2013
$335.5M
COG SDMC - Statistics CoreU10CA180899 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TODD A ALONZO · 2014 to 2026
$132.8M
Biology/prognostic implications of Flt3 mutations in AMLR01CA114563 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI MESHINCHI, SOHEIL · 2005 to 2016
$4.4M
High-Performance Compute Cluster for Comprehensive Cancer and Infectious Diseases ResearchS10OD028685 · OD · FRED HUTCHINSON CANCER RESEARCH CENTER · PI BRADLEY, PHILIP · 2020 to 2020
$2.0M
Co-targeting BET Bromodomain Proteins and Aberrant Signaling in AML.K08CA256489 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HUANG, BENJAMIN · 2021 to 2025
$1.2M
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS K08 CA256489NCI NIH HHS R01 CA114563NCI NIH HHS U10 CA098543NCI NIH HHS U10 CA180886NCI NIH HHS U10 CA180899NIH HHS HHSN261200800001ENIH HHS S10 OD028685
6 · The paper itself

Abstract

Relapsed or refractory pediatric acute myeloid leukemia (AML) is associated with poor outcomes and relapse risk prediction approaches have not changed significantly in decades. To build a robust transcriptional risk prediction model for pediatric AML, we perform RNA-sequencing on 1503 primary diagnostic samples. While a 17 gene leukemia stem cell signature (LSC17) is predictive in our aggregated pediatric study population, LSC17 is no longer predictive within established cytogenetic and molecular (cytomolecular) risk groups. Therefore, we identify distinct LSC signatures on the basis of AML cytomolecular subtypes (LSC47) that were more predictive than LSC17. Based on these findings, we build a robust relapse prediction model within a training cohort and then validate it within independent cohorts. Here, we show that LSC47 increases the predictive power of conventional risk stratification and that applying biomarkers in a manner that is informed by cytomolecular profiling outperforms a uniform biomarker approach.

Indexed as

Gene Expression ProfilingLeukemia, Myeloid, AcuteBiomarkersChildHumansNeoplastic Stem CellsRecurrenceRNABiomarkersRNA

Identifiers

PMID36123353
PMCPMC9485122

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.