Evidence map›Paper›PMID 36122200›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Nanomolar inhibition of SARS-CoV-2 infection by an unmodified peptide targeting the prehairpin intermediate of the spike protein.

Kailu Yang, Chuchu Wang, Alex J B Kreutzberger, Ravi Ojha, Suvi Kuivanen, Sergio Couoh-Cardel, Serena Muratcioglu, Timothy J Eisen, K Ian White, Richard G Held and 10 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  9. Membrane-Targeting Antivirals.International journal of molecular sciences · 2025
    Review
  10. Article
  11. Article
  12. Article
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  20. Ultrafast universal fabrication of configurable porous silicone-based elastomers by Joule heating chemistry.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 2 countries.

Kailu YangHHMI, Stanford University, Stanford, CA 94305.ORCID 0000-0002-8234-1997
Chuchu WangHHMI, Stanford University, Stanford, CA 94305.
Alex J B KreutzbergerDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115.
Ravi OjhaDepartment of Virology, University of Helsinki, Helsinki 00290, Finland.
Suvi KuivanenDepartment of Virology, University of Helsinki, Helsinki 00290, Finland.
Sergio Couoh-CardelHHMI, Stanford University, Stanford, CA 94305.
Serena MuratciogluHHMI, University of California, Berkeley, Berkeley, CA 94720.
Timothy J EisenHHMI, University of California, Berkeley, Berkeley, CA 94720.
K Ian WhiteHHMI, Stanford University, Stanford, CA 94305.ORCID 0000-0001-8182-3655
Richard G HeldHHMI, Stanford University, Stanford, CA 94305.
Subu SubramanianHHMI, University of California, Berkeley, Berkeley, CA 94720.ORCID 0000-0001-6095-7021
Kendra MarcusHHMI, University of California, Berkeley, Berkeley, CA 94720.
Richard A PfuetznerHHMI, Stanford University, Stanford, CA 94305.
Luis EsquiviesHHMI, Stanford University, Stanford, CA 94305.
Catherine A DoyleDepartment of Pharmacology, University of Virginia, Charlottesville, VA 22903.ORCID 0000-0002-5415-2371
John KuriyanHHMI, University of California, Berkeley, Berkeley, CA 94720.
Olli VapalahtiDepartment of Virology, University of Helsinki, Helsinki 00290, Finland.ORCID 0000-0003-2270-6824
Giuseppe BalistreriDepartment of Virology, University of Helsinki, Helsinki 00290, Finland.ORCID 0000-0002-3585-559X
Tom KirchhausenDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115.
Axel T BrungerHHMI, Stanford University, Stanford, CA 94305.ORCID 0000-0001-5121-2036
Stanford University · USUniversity of California, Berkeley · USUniversity of Helsinki · FIBoston Children's Hospital · USUniversity of Virginia · US

Funding

MOLECULAR BASIS OF VIRAL INFECTIVITYT32AI007245 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Aaron Gregory Schmidt · 1985 to 2026
$11.3M
VISUALIZATION OF SUBCELLULAR DYNAMICS IN MULTICELLULAR ORGANISMSR35GM130386 · NIGMS · BOSTON CHILDREN'S HOSPITAL · PI TOMAS KIRCHHAUSEN · 2019 to 2026
$4.0M
Mechanism and Inhibition of SARS-CoV-2 EntryR01AI163019 · NIAID · WASHINGTON UNIVERSITY · PI KIRCHHAUSEN, TOMAS, WHELAN, SEAN PJ · 2021 to 2025
$3.8M
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI163019NIAID NIH HHS T32 AI007245NIGMS NIH HHS R35 GM130386
6 · The paper itself

Abstract

Variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) challenge currently available coronavirus disease 2019 vaccines and monoclonal antibody therapies through epitope change on the receptor binding domain of the viral spike glycoprotein. Hence, there is a specific urgent need for alternative antivirals that target processes less likely to be affected by mutation, such as the membrane fusion step of viral entry into the host cell. One such antiviral class includes peptide inhibitors, which block formation of the so-called heptad repeat 1 and 2 (HR1HR2) six-helix bundle of the SARS-CoV-2 spike (S) protein and thus interfere with viral membrane fusion. We performed structural studies of the HR1HR2 bundle, revealing an extended, well-folded N-terminal region of HR2 that interacts with the HR1 triple helix. Based on this structure, we designed an extended HR2 peptide that achieves single-digit nanomolar inhibition of SARS-CoV-2 in cell-based and virus-based assays without the need for modifications such as lipidation or chemical stapling. The peptide also strongly inhibits all major SARS-CoV-2 variants to date. This extended peptide is ∼100-fold more potent than all previously published short, unmodified HR2 peptides, and it has a very long inhibition lifetime after washout in virus infection assays, suggesting that it targets a prehairpin intermediate of the SARS-CoV-2 S protein. Together, these results suggest that regions outside the HR2 helical region may offer new opportunities for potent peptide-derived therapeutics for SARS-CoV-2 and its variants, and even more distantly related viruses, and provide further support for the prehairpin intermediate of the S protein.

Indexed as

COVID-19 Drug TreatmentSpike Glycoprotein, CoronavirusAntiviral AgentsHumansPeptidesSARS-CoV-2Antiviral AgentsPeptidesSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2HR2inhibitormembrane fusionpeptideSARS-CoV-2

Identifiers

PMID36122200
PMCPMC9546559
OpenAlexW4296297403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.