Evidence map›Paper›PMID 36121482›Full record

ArticleWorld journal of microbiology & biotechnology2022

Isolation and evaluation of strong endogenous promoters for the heterologous expression of proteins in Pichia pastoris.

Yafei Zhang, Shengyan Wang, Lingfang Lu, Chenshan Zhang, Fan Cai, Yao Lin, Yide Huang

Abstract read
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In one paragraph

Article in World journal of microbiology & biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Advances in Metabolic Engineering ofJournal of fungi (Basel, Switzerland) · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yafei Zhang *Engineering Research Center of Industrial Microbiology, College of Life Sciences, Fujian Normal University, 350007, Fuzhou, China.
Shengyan Wang *Engineering Research Center of Industrial Microbiology, College of Life Sciences, Fujian Normal University, 350007, Fuzhou, China.
Lingfang LuEngineering Research Center of Industrial Microbiology, College of Life Sciences, Fujian Normal University, 350007, Fuzhou, China.
Chenshan ZhangEngineering Research Center of Industrial Microbiology, College of Life Sciences, Fujian Normal University, 350007, Fuzhou, China.
Fan CaiEngineering Research Center of Industrial Microbiology, College of Life Sciences, Fujian Normal University, 350007, Fuzhou, China.
Yao LinCentral Laboratory at the Second Affiliated Hospital of Fujian Traditional, Innovation and Transformation Center, Chinese Medical University, Fujian- Macao Science and Technology Cooperation Base of Traditional Chinese Medicine-Oriented Chronic Disease Prevention and Treatment, Fujian University of Traditional Chinese Medicine, 350122, Fuzhou, Fujian, P.R. China.
Yide HuangEngineering Research Center of Industrial Microbiology, College of Life Sciences, Fujian Normal University, 350007, Fuzhou, China. ydhuang@fjnu.edu.cn.
Fujian Normal University · CNFujian University of Traditional Chinese Medicine · CN

Funding

Fujian Normal University, Fujian Provincial Science Fund for Distinguished Young Scholar 2020J01311402he Natural Science Foundation of Fujian Province 2022J01132183
6 · The paper itself

Abstract

backgroundThe heterologous expression of biosynthetic pathway genes for pharmaceutical or fine chemical production usually requires to express more than one gene in the host cells. In eukaryotes, the pathway flux is typically balanced by controlling the transcript levels of the genes involved. It is difficult to balance the stoichiometric fine-tuning of the reaction steps of the pathway by acting on one or two promoters. Furthermore, the promoter used should not be identical to avoid loss of inserted genes by recombination or dilute its transcription factors.

resultsBased on RNA-seq data, 18 candidate genes with the highest transcription levels at three carbon sources (glucose, glycerol and methanol) were selected and their promoter regions were isolated from GS115 genome. The performance of these promoters on the level of protein production was evaluated using LacZ and EGFP genes as the reporters, respectively. These isolated promoters all exhibited activity to express LacZ gene. Using LacZ as a reporter, of the 18 promoter candidates, 9 promoters showed higher expression levels for the reporter compare to pGAP, a strong promoter widely used for constitutive expression of heterologous proteins in Pichia pastoris. These promoters with high expression levels were further employed to evaluate secreted expression using EGFP as a reporter. 6 promoters exhibited stronger protein expression compare to pGAP. Interestingly, the protein expression driven by pFDH1 was slightly higher than that of commonly used pAOX1 at methanol, and methanol-induced expression of pFDH1 was not repressed by glycerol.

conclusionThe various promoters identified in this study could be used for heterologous expression of biosynthetic pathway genes for pharmaceutical or fine chemical production. the methanol-induced pFDH1 that is not repressed by glycerol is an attractive alternative to pAOX1 and may provide a novel way to produce heterologous proteins in Pichia pastoris.

Indexed as

MethanolPichiaCarbonGlucoseGlycerolPromoter Regions, GeneticSaccharomycetalesTranscription FactorsCarbonGlucoseGlycerolMethanolTranscription FactorsHeterologous expressionPichia pastorisPromoterTranscriptional fine-tuning

Identifiers

PMID36121482
OpenAlexW4296322706

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.