Evidence map›Paper›PMID 36118305›Full record

ArticleJournal of clinical virology plus2022

SARS-CoV-2 Omicron detection by antigen tests using saliva.

Kaoru Murakami, Sumio Iwasaki, Satoshi Oguri, Kumiko Tanaka, Rigel Suzuki, Kasumi Hayasaka, Shinichi Fujisawa, Chiaki Watanabe, Satoshi Konno, Isao Yokota and 3 more

Abstract read
In one paragraph

Article in Journal of clinical virology plus, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Prospective study of three saliva qualitative antigen testing kits for the detection of SARS-CoV-2 among mainly symptomatic patients in Japan.Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy · 2023
    Observational
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kaoru MurakamiDivision of Molecular Psychoimmunology, Institute for Genetic Medicine, Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Sumio IwasakiDivision of Laboratory and Transfusion Medicine, Hokkaido University Hospital, Sapporo, Japan.
Satoshi OguriDivision of Laboratory and Transfusion Medicine, Hokkaido University Hospital, Sapporo, Japan.
Kumiko TanakaDivision of Molecular Psychoimmunology, Institute for Genetic Medicine, Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Rigel SuzukiDepartment of Microbiology and Immunology, Hokkaido University Faculty of Medicine, Sapporo, Japan.
Kasumi HayasakaDivision of Laboratory and Transfusion Medicine, Hokkaido University Hospital, Sapporo, Japan.
Shinichi FujisawaDivision of Laboratory and Transfusion Medicine, Hokkaido University Hospital, Sapporo, Japan.
Chiaki WatanabeDivision of Laboratory and Transfusion Medicine, Hokkaido University Hospital, Sapporo, Japan.
Satoshi KonnoDepartment of Respiratory Medicine, Hokkaido University Faculty of Medicine, Sapporo, Japan.
Isao YokotaDepartment of Biostatistics, Hokkaido University Faculty of Medicine, Sapporo, Japan.
Takasuke FukuharaDepartment of Microbiology and Immunology, Hokkaido University Faculty of Medicine, Sapporo, Japan.
Masaaki MurakamiDivision of Molecular Psychoimmunology, Institute for Genetic Medicine, Graduate School of Medicine, Hokkaido University, Sapporo, Japan.
Takanori TeshimaDivision of Laboratory and Transfusion Medicine, Hokkaido University Hospital, Sapporo, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Omicron emerged in November 2021 and became the predominant SARS-CoV-2 variant globally. It spreads more rapidly than ancestral lineages and its rapid detection is critical for the prevention of disease outbreaks. Antigen tests such as immunochromatographic assay (ICA) and chemiluminescent enzyme immunoassay (CLEIA) yield results more quickly than standard polymerase chain reaction (PCR). However, their utility for the detection of the Omicron variant remains unclear. We herein evaluated the performance of ICA and CLEIA in saliva from 51 patients with Omicron and 60 PCR negative individuals. The sensitivity and specificity of CLEIA were 98.0% (95%CI: 89.6-100.0%) and 100.0% (95%CI: 94.0-100.0%), respectively, with fine correlation with cycle threshold (Ct) values. The sensitivity and specificity of ICA were 58.8% (95%CI: 44.2-72.4%) and 100.0% (95%CI: 94.0-100.0%), respectively. The sensitivity of ICA was 100.0% (95%CI: 80.5-100.0%) when PCR Ct was less than 25. The Omicron can be efficiently detected in saliva by CLEIA. ICA also detects high viral load Omicron using saliva.

Indexed as

ALP, alkaline phosphataseCLEIACLEIA, chemiluminescent enzyme immunoassayCOVID-19Ct, cycle thresholdICAICA, immunochromatographic assayLumipulseNPS, nasopharyngeal swabPCR, polymerase chain reactionRT-PCR, Real-time reverse transcription–quantitative PCRSalivaSARS-CoV-2VOC, variant of concern

Identifiers

PMID36118305
PMCPMC9472459

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.