ArticlePlant biotechnology journal2023
The complex genome and adaptive evolution of polyploid Chinese pepper (Zanthoxylum armatum and Zanthoxylum bungeanum).
Article in Plant biotechnology journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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25 citing papers in PubMed.
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- A new super-pangenome pipeline reveals domestication signatures of conserved noncoding sequences in the orange subfamily.Molecular biology and evolution · 2026Article
- Genome-wide identification and functional characterization of MAPKK gene family in Zanthoxylum armatum DC. reveal its potential role in ecological adaptive evolution.BMC genomics · 2026Article
- Economic Uses, Specific Metabolites and Molecular Biology Research of the GenusFoods (Basel, Switzerland) · 2026Review
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- Genome-wide identification and functional characterization of the LBD transcription factor gene family in Zanthoxylum armatum DC. reveal its potential role in leaf variation.BMC plant biology · 2025Article
- Genome-wide analysis of the SPL family in Zanthoxylum armatum and ZaSPL21 promotes flowering and improves salt tolerance in transgenic Nicotiana benthamiana.Plant molecular biology · 2025Article
- Integrated morphophysiological, transcriptomic, and metabolomic data uncover the molecular mechanism of environmental adaptation ofFrontiers in plant science · 2025Article
- In Vitro Inducted TetraploidPlants (Basel, Switzerland) · 2024Article
- Convergent evolution of berberine biosynthesis.Science advances · 2024Article
- Comprehensive evaluation of freezing tolerance in prickly ash and its correlation with ecological and geographical origin factors.Scientific reports · 2024Article
- The complex hexaploid oil-Camellia genome traces back its phylogenomic history and multi-omics analysis of Camellia oil biosynthesis.Plant biotechnology journal · 2024Article
- Genetic diversity analysis and DNA fingerprint construction of Zanthoxylum species based on SSR and iPBS markers.BMC plant biology · 2024Article
- Diversity analysis of panicle traits in Chinese prickly ash germplasm resources and their influence on its systematic classification.Scientific reports · 2024Article
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21 authors.
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Abstract
Zanthoxylum armatum and Zanthoxylum bungeanum, known as 'Chinese pepper', are distinguished by their extraordinary complex genomes, phenotypic innovation of adaptive evolution and species-special metabolites. Here, we report reference-grade genomes of Z. armatum and Z. bungeanum. Using high coverage sequence data and comprehensive assembly strategies, we derived 66 pseudochromosomes comprising 33 homologous phased groups of two subgenomes, including autotetraploid Z. armatum. The genomic rearrangements and two whole-genome duplications created large (~4.5 Gb) complex genomes with a high ratio of repetitive sequences (>82%) and high chromosome number (2n = 4x = 132). Further analysis of the high-quality genomes shed lights on the genomic basis of involutional reproduction, allomones biosynthesis and adaptive evolution in Chinese pepper, revealing a high consistent relationship between genomic evolution, environmental factors and phenotypic innovation. Our study provides genomic resources and new insights for investigating diversification and phenotypic innovation in Chinese pepper, with broader implications for the protection of plants under severe environmental changes.
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